| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is fliF [H]
Identifier: 21242698
GI number: 21242698
Start: 2284319
End: 2286043
Strand: Reverse
Name: fliF [H]
Synonym: XAC1954
Alternate gene names: 21242698
Gene position: 2286043-2284319 (Counterclockwise)
Preceding gene: 21242699
Following gene: 21242697
Centisome position: 44.17
GC content: 66.9
Gene sequence:
>1725_bases ATGGCACTCGCGATCAGCAAAGAAAACATGAACCAGAACGCCGAAAAGGCGGGGCAATGGTTCGACCGTGTCCGCAGCCT GCAGATCACCCGCAAGCTGACCATGATGGCGATGATCGCCCTGGCGGTCGCGGCCGGTCTGGCGGTGTTCTTCTGGTCGC AGAAGCCTGGCTATCAATCGCTGTACACCGGCCTGGACGAAAAGGGCAATGCCGAAGCGGCCGACCTGCTGCGCACCGCG CAGATTCCCTACAAGATCGACCAGGGCACCGGCGCCATTTCGGTGCCGCAGGACCGTCTGTACGACGCCCGCCTCAAGCT GGCCGGCTCCGGCCTGACCGGCAAGGAAACCGGCGGCGGCTTCGAACTGATGGAAAAGGACCCGGGCTTCGGCGTCAGCC AGTTCGTGGAAAACGCCCGCTACCAGCACGCGCTGGAAACCGAACTCTCGCGCACCATCGGCACCCTGCGCCCGGTGCGC GAGGCCCGTGTGCATCTGGCCATTCCCAAGCCCAGCGCCTTCACCCGCCAGCGCGATGTGGCCAGCGCCTCGGTGGTGCT GGAACTACGCGGCGGCCAGGGCCTGGAGCGCAACCAGGTCGATGCCATCGTCAATCTGGTGGCCTCCAGCATTCCGGACA TGACCCCCGAACGCGTCACCGTGGTCGACCAGAGCGGCCGCATGCTCTCCATCGCCGACCCGAACAGCGATGCGGCGCAG CACGCTGCCCAGTTCGAACAGGTGCGCCGCCAGGAAAGCTCCTACAACCAGCGCATCCGCGAACTGCTGGAGCCGATGAC CGGCCCGGGCCGGGTCAATCCGGAAACCAGCGTGGACATGGATTTCTCGGTGGTCGAAGAGGCCCGCGAGCTCTACAACG GCGAGCCGGCCAAGCTGCGCAGCGAGCAGGTCAGCGACACCAGCACCAGCGCTACCGGCCCGCAGGGCCCTCCGGGCGCC ACCAGCAATAGCCCCGGCCAGCCGCCGGCACCGGCAGTCGCCGGCGCGCCGGGCACTCCGGCGGCCGCCAACGGCCAGGC CGCCGCCCCAGCCACGCCCACCGAAAGTTCCAAGAGCGCCACCCGTAACTACGAATTGGACCGAACCTTGCAACACACCC GCCAGCCGGCCGGTCGCATCAAGCGCGTCTCGGTGGCGGTGCTGCTGGACAACGTCCCGCGCCCGGGCGCCAAGGGCAAG ATGGTCGAACAGCCGCTCACCGCCGCCGAGCTCACCCGTATCGAAGGCCTGGTCAAGCAGGCAGTGGGTTTCGACGCGGC ACGCGGCGACACGGTGTCGGTGATGAATGCCCCGTTCGTGCGCGAAGCGGTGGCTGGTGAAGAAGGTCCGAAGTGGTGGG AAGATCCGCGCGTGCAGAACGGTCTGCGCCTGCTGGTCGGCGCGGTGGTGGTGCTGGCGCTGCTGTTCGGTGTGGTGCGC CCCACCCTGCGTCAGCTCACCGGCGTGACCGCGGTCAAGGACAAGCAAGGCAAGGCTGGCAAGGATGGCACTCCACAGAG CGCCGACGTGCGGATGGTCGACGACGATGACGACCTGATGCCCCGCCTGGAAGAAGACACCGCGCAGATCGGTCAGGACA AAAAGACCCCGATCGCTCTGCCAGACGCCTACGAAGAGCGCATGCGCCTGGCGCGCGAGGCAGTCAAAGCCGATTCAAAA CGTGTCGCACAAGTCGTGAAGGGATGGGTCGCCAGTGAAGCCTGA
Upstream 100 bases:
>100_bases CAGTCCCAGGTGGCCTTCCGCGCCACCGTGGAAGTCCGCAACCGTCTCGTCCAGGCTTATCAGGACGTCATGAACATGCC GCTGTAAAGGTTGACGACAC
Downstream 100 bases:
>100_bases TACACAACCGATGACCGGAGTACAGCGCGCCGCGGTGCTGTTGCTGTCGCTGGGTGAGAGCGACGCGGCCGAAGTGCTCA AGCACATGGATCCCAAGGAG
Product: flagellar MS-ring protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 574; Mature: 573
Protein sequence:
>574_residues MALAISKENMNQNAEKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLRTA QIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVENARYQHALETELSRTIGTLRPVR EARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQ HAAQFEQVRRQESSYNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVSDTSTSATGPQGPPGA TSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGK MVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVMNAPFVREAVAGEEGPKWWEDPRVQNGLRLLVGAVVVLALLFGVVR PTLRQLTGVTAVKDKQGKAGKDGTPQSADVRMVDDDDDLMPRLEEDTAQIGQDKKTPIALPDAYEERMRLAREAVKADSK RVAQVVKGWVASEA
Sequences:
>Translated_574_residues MALAISKENMNQNAEKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLRTA QIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVENARYQHALETELSRTIGTLRPVR EARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQ HAAQFEQVRRQESSYNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVSDTSTSATGPQGPPGA TSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGK MVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVMNAPFVREAVAGEEGPKWWEDPRVQNGLRLLVGAVVVLALLFGVVR PTLRQLTGVTAVKDKQGKAGKDGTPQSADVRMVDDDDDLMPRLEEDTAQIGQDKKTPIALPDAYEERMRLAREAVKADSK RVAQVVKGWVASEA >Mature_573_residues ALAISKENMNQNAEKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLRTAQ IPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVENARYQHALETELSRTIGTLRPVRE ARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQH AAQFEQVRRQESSYNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVSDTSTSATGPQGPPGAT SNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKM VEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVMNAPFVREAVAGEEGPKWWEDPRVQNGLRLLVGAVVVLALLFGVVRP TLRQLTGVTAVKDKQGKAGKDGTPQSADVRMVDDDDDLMPRLEEDTAQIGQDKKTPIALPDAYEERMRLAREAVKADSKR VAQVVKGWVASEA
Specific function: The M ring may be actively involved in energy transduction [H]
COG id: COG1766
COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fliF family [H]
Homologues:
Organism=Escherichia coli, GI1788248, Length=573, Percent_Identity=33.8568935427574, Blast_Score=278, Evalue=6e-76,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013556 - InterPro: IPR000067 - InterPro: IPR006182 [H]
Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]
EC number: NA
Molecular weight: Translated: 61741; Mature: 61610
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALAISKENMNQNAEKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQS CCEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHH LYTGLDEKGNAEAADLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGG HHHCCCCCCCCHHHHHHHHHCCCEEECCCCCCEECCHHHHHHHHHHEECCCCCCCCCCCC FELMEKDPGFGVSQFVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDV CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHH ASASVVLELRGGQGLERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQ CCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCHHHH HAAQFEQVRRQESSYNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLR HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHH SEQVSDTSTSATGPQGPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSA HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH TRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQ HHCCCHHHHHHHHHCHHHHHHHHHHEEHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHH AVGFDAARGDTVSVMNAPFVREAVAGEEGPKWWEDPRVQNGLRLLVGAVVVLALLFGVVR HHCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH PTLRQLTGVTAVKDKQGKAGKDGTPQSADVRMVDDDDDLMPRLEEDTAQIGQDKKTPIAL HHHHHHHCCHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHCHHHHHHHHHCCCCCCCCCC PDAYEERMRLAREAVKADSKRVAQVVKGWVASEA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ALAISKENMNQNAEKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQS CEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHH LYTGLDEKGNAEAADLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGG HHHCCCCCCCCHHHHHHHHHCCCEEECCCCCCEECCHHHHHHHHHHEECCCCCCCCCCCC FELMEKDPGFGVSQFVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDV CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHH ASASVVLELRGGQGLERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQ CCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCHHHH HAAQFEQVRRQESSYNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLR HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHH SEQVSDTSTSATGPQGPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSA HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH TRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQ HHCCCHHHHHHHHHCHHHHHHHHHHEEHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHH AVGFDAARGDTVSVMNAPFVREAVAGEEGPKWWEDPRVQNGLRLLVGAVVVLALLFGVVR HHCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH PTLRQLTGVTAVKDKQGKAGKDGTPQSADVRMVDDDDDLMPRLEEDTAQIGQDKKTPIAL HHHHHHHCCHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHCHHHHHHHHHCCCCCCCCCC PDAYEERMRLAREAVKADSKRVAQVVKGWVASEA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8675317; 10984043 [H]