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The map label for this gene is yciR [C]

Identifier: 21242682

GI number: 21242682

Start: 2265531

End: 2267618

Strand: Reverse

Name: yciR [C]

Synonym: XAC1938

Alternate gene names: 21242682

Gene position: 2267618-2265531 (Counterclockwise)

Preceding gene: 21242683

Following gene: 21242681

Centisome position: 43.81

GC content: 67.82

Gene sequence:

>2088_bases
GTGGTCGGAACCTACAACCCTGGCATGGTGATGCTGTCGCTGGTGGTGGCCGTGCTGGCTTCCTACACCGCGCTGTATCT
GGCCGCACGCACCACTGCCCGTGGCGGCGGCATCGCGGCCGCTTGGCTGATGGGCGGCGCCATTGCCATGGGCATCGGCA
TCTGGTCGATGCACTTCGTCGGCATGCTGGCGTTCCGCCTGCCGATTCCGGTGGGCTACGACCTGGCGCTGACGTGTTAT
TCGATGCTGGCGGCGATCCTGACCTCGGCGCTGGCGCTCTGGCTGACCTCGCGCGCGAACCTGCCGTTGCTCCGCTTGGG
CCTGGGTGCGCTGTTGATGGGGCTTGGCATCGCGCTGATGCATTACATGGGCATGGATGCGCTGCGCATGGTGCCGGCCA
TTCGCTACGACCCGCTGCTGTTCGGGCTGTCGATCGCCATCGCCATCGGCGCCTCCGGCGCCGCGTTGTGGATCGCGTTC
CGGCTGCGCCACGCTGGGCAACGCTCCAGCCTGCGCCTGATCGCCGCCTCGATCATGGGCGTGGCGATCGTGGGCATGCA
TTACACCGGCATGGCCGCCGCCCGGTTCGCGCCCGGTAGCGTGTGCGGCGCGGTTGCCGAGACGCATCTACCGTTGTCGT
GGCTGACGGCGGTGGTGGTGCTGGTGACCTTGGTCCTGCTGATGCTGGCGCTGGTCATTTCGTTGCTGTCGCGCCGCTTT
CAGCAGCGCACCGATGTGCTGGCGCAATCGCTGGCCAAGGCCAATGCCGAACTGGCACTGGCGACGCTGCACGACCCACT
CACCCGGCTGCCGAACCGCATCCTGCTGCACGAGCATCTCGTGCAGAACATCGAACGCGCCCAGCGCCAGGGGCAGCGCT
TCGCGGTCATGCTGATCAACCTGGACGGCTTCAAGGTGATCAACGACGGTTATGGTCATGCGTTGGGCGACCGCCTGCTG
GTGGTGGTGGCCGAGCGTTTGAACGCACACCGGCGCGCGCATGGCAGCCTGGCGCGGCTGGGCGCAGACGAATTCGTGCT
GGTGGCCGACATCGCAGACCCGGAAGATGCCGCTGCGCTGGCCGCGCATCTGGTGCAGGCGCTGGCGGTACCGTTCCTGG
TTGCCAACCACGAGCTGCGCCTGAGCAGCAGCATTGGCATTGCGCTGTACCCGGAAGACGCCGGTAGCGAGCACCAGCTG
CTGACGCATGCCGATGCGGCAATGACCCATGCCAAACATGCCGGCCGCAACCGCTACAGCTTTTTCGAACGCTCGATGAC
GGCCACCACCCGCGACCGCCTGCAGCTGCTGCAGGAACTGCCGCGCGCGCTGGAACTGGGACAGTTCGTGCTGCATTACC
AGCCCAAGTACTGCGCCGAGGACGGCCGCCCGATCGGCGCCGAAGCGCTGATCCGCTGGCAGCACCCGGAACGCGGCCTG
GTGCCGCCGGACAGCTTCATTCCGCTGGCCGAACGCAGCGGCATGATCGGCCTGCTCGGCAGCTGGGTGCTGCGGCAGGC
TTGCCGCCAGATGCGCGACTGGCGGCAGGCCGGGCACGGCGACTGGCGGGTGGCGGTCAACCTGTCGGCCCTCCAGCTGG
CCTCGCCCAGCCTGCTGGACGAAGTGGCCACCACGCTGAGCGAATATGCGCTGGCCCCTGGCCAGCTCACCCTGGAAATC
ACCGAAACCATGGCCATGCGCGACGCCGAGGCCTGCCTGCGCACCCTGGGCCAGCTCAATGCGCTGGGCGTGCGCATCGC
CATCGACGACTTCGGCACCGGCTATTCCAATCTGCTCTACCTGCGCAAGCTGCCGGCGCACGAGCTCAAGATCGACCGCA
GTTTCGTCCAGGCCATGGATGGCAGCGCCGAAGACATCGCCATCGTGGCGGCCGTGGTCGCGCTGGCGCACACCATGCGC
CTGCAAGTGGTGGCCGAAGGCGTGGAAACCCTCGCCCAGCGCAACACCCTGGAACGGCTGGGCTGCGACCAGCTGCAAGG
CTATCTGCTGGGCCGCCCGATGGACGCCGAACGCTTCATCGCCACCGTGGTCGCCCAGCGCGACGGCCCGCGCCGCCTGG
CCAGCTGA

Upstream 100 bases:

>100_bases
CGCGGGGTTGATGGCATTGGCCGCTTCCCCGCGCTCAAGAAGTCGCGCAAGGGGTCGCTAGGTCTTGGGCAACGCGTCTT
TCGACGTAGGAACTGGATAG

Downstream 100 bases:

>100_bases
GCCGCTCACTGCCGCCCCGACTTCGCGCCACCGGTTCACCGCGGCCCCCGCTGTGCCGATTCCCCCATGCCCAATCCCGA
TTCCCAGCTCCACAAACTGG

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 695; Mature: 695

Protein sequence:

>695_residues
MVGTYNPGMVMLSLVVAVLASYTALYLAARTTARGGGIAAAWLMGGAIAMGIGIWSMHFVGMLAFRLPIPVGYDLALTCY
SMLAAILTSALALWLTSRANLPLLRLGLGALLMGLGIALMHYMGMDALRMVPAIRYDPLLFGLSIAIAIGASGAALWIAF
RLRHAGQRSSLRLIAASIMGVAIVGMHYTGMAAARFAPGSVCGAVAETHLPLSWLTAVVVLVTLVLLMLALVISLLSRRF
QQRTDVLAQSLAKANAELALATLHDPLTRLPNRILLHEHLVQNIERAQRQGQRFAVMLINLDGFKVINDGYGHALGDRLL
VVVAERLNAHRRAHGSLARLGADEFVLVADIADPEDAAALAAHLVQALAVPFLVANHELRLSSSIGIALYPEDAGSEHQL
LTHADAAMTHAKHAGRNRYSFFERSMTATTRDRLQLLQELPRALELGQFVLHYQPKYCAEDGRPIGAEALIRWQHPERGL
VPPDSFIPLAERSGMIGLLGSWVLRQACRQMRDWRQAGHGDWRVAVNLSALQLASPSLLDEVATTLSEYALAPGQLTLEI
TETMAMRDAEACLRTLGQLNALGVRIAIDDFGTGYSNLLYLRKLPAHELKIDRSFVQAMDGSAEDIAIVAAVVALAHTMR
LQVVAEGVETLAQRNTLERLGCDQLQGYLLGRPMDAERFIATVVAQRDGPRRLAS

Sequences:

>Translated_695_residues
MVGTYNPGMVMLSLVVAVLASYTALYLAARTTARGGGIAAAWLMGGAIAMGIGIWSMHFVGMLAFRLPIPVGYDLALTCY
SMLAAILTSALALWLTSRANLPLLRLGLGALLMGLGIALMHYMGMDALRMVPAIRYDPLLFGLSIAIAIGASGAALWIAF
RLRHAGQRSSLRLIAASIMGVAIVGMHYTGMAAARFAPGSVCGAVAETHLPLSWLTAVVVLVTLVLLMLALVISLLSRRF
QQRTDVLAQSLAKANAELALATLHDPLTRLPNRILLHEHLVQNIERAQRQGQRFAVMLINLDGFKVINDGYGHALGDRLL
VVVAERLNAHRRAHGSLARLGADEFVLVADIADPEDAAALAAHLVQALAVPFLVANHELRLSSSIGIALYPEDAGSEHQL
LTHADAAMTHAKHAGRNRYSFFERSMTATTRDRLQLLQELPRALELGQFVLHYQPKYCAEDGRPIGAEALIRWQHPERGL
VPPDSFIPLAERSGMIGLLGSWVLRQACRQMRDWRQAGHGDWRVAVNLSALQLASPSLLDEVATTLSEYALAPGQLTLEI
TETMAMRDAEACLRTLGQLNALGVRIAIDDFGTGYSNLLYLRKLPAHELKIDRSFVQAMDGSAEDIAIVAAVVALAHTMR
LQVVAEGVETLAQRNTLERLGCDQLQGYLLGRPMDAERFIATVVAQRDGPRRLAS
>Mature_695_residues
MVGTYNPGMVMLSLVVAVLASYTALYLAARTTARGGGIAAAWLMGGAIAMGIGIWSMHFVGMLAFRLPIPVGYDLALTCY
SMLAAILTSALALWLTSRANLPLLRLGLGALLMGLGIALMHYMGMDALRMVPAIRYDPLLFGLSIAIAIGASGAALWIAF
RLRHAGQRSSLRLIAASIMGVAIVGMHYTGMAAARFAPGSVCGAVAETHLPLSWLTAVVVLVTLVLLMLALVISLLSRRF
QQRTDVLAQSLAKANAELALATLHDPLTRLPNRILLHEHLVQNIERAQRQGQRFAVMLINLDGFKVINDGYGHALGDRLL
VVVAERLNAHRRAHGSLARLGADEFVLVADIADPEDAAALAAHLVQALAVPFLVANHELRLSSSIGIALYPEDAGSEHQL
LTHADAAMTHAKHAGRNRYSFFERSMTATTRDRLQLLQELPRALELGQFVLHYQPKYCAEDGRPIGAEALIRWQHPERGL
VPPDSFIPLAERSGMIGLLGSWVLRQACRQMRDWRQAGHGDWRVAVNLSALQLASPSLLDEVATTLSEYALAPGQLTLEI
TETMAMRDAEACLRTLGQLNALGVRIAIDDFGTGYSNLLYLRKLPAHELKIDRSFVQAMDGSAEDIAIVAAVVALAHTMR
LQVVAEGVETLAQRNTLERLGCDQLQGYLLGRPMDAERFIATVVAQRDGPRRLAS

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=443, Percent_Identity=36.568848758465, Blast_Score=270, Evalue=3e-73,
Organism=Escherichia coli, GI87081921, Length=415, Percent_Identity=36.144578313253, Blast_Score=250, Evalue=2e-67,
Organism=Escherichia coli, GI226510982, Length=459, Percent_Identity=31.5904139433551, Blast_Score=221, Evalue=2e-58,
Organism=Escherichia coli, GI1790496, Length=287, Percent_Identity=34.1463414634146, Blast_Score=159, Evalue=6e-40,
Organism=Escherichia coli, GI1787055, Length=389, Percent_Identity=28.7917737789203, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI87081845, Length=266, Percent_Identity=33.0827067669173, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI1786507, Length=252, Percent_Identity=35.3174603174603, Blast_Score=147, Evalue=3e-36,
Organism=Escherichia coli, GI1788849, Length=417, Percent_Identity=28.2973621103118, Blast_Score=143, Evalue=3e-35,
Organism=Escherichia coli, GI87081743, Length=242, Percent_Identity=34.297520661157, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI87082096, Length=475, Percent_Identity=28.6315789473684, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1788502, Length=248, Percent_Identity=33.8709677419355, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI87081980, Length=263, Percent_Identity=33.0798479087452, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1788381, Length=425, Percent_Identity=24.4705882352941, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788956, Length=167, Percent_Identity=35.9281437125749, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1787802, Length=179, Percent_Identity=32.4022346368715, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI87081977, Length=215, Percent_Identity=28.8372093023256, Blast_Score=83, Evalue=7e-17,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=32.1212121212121, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1786584, Length=208, Percent_Identity=26.4423076923077, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI87082007, Length=207, Percent_Identity=32.8502415458937, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=32.9268292682927, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787410, Length=154, Percent_Identity=27.9220779220779, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=29.585798816568, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1789650, Length=421, Percent_Identity=21.3776722090261, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI87081881, Length=178, Percent_Identity=33.1460674157303, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 75282; Mature: 75282

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: PS50924 MHYT ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGTYNPGMVMLSLVVAVLASYTALYLAARTTARGGGIAAAWLMGGAIAMGIGIWSMHFV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GMLAFRLPIPVGYDLALTCYSMLAAILTSALALWLTSRANLPLLRLGLGALLMGLGIALM
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
HYMGMDALRMVPAIRYDPLLFGLSIAIAIGASGAALWIAFRLRHAGQRSSLRLIAASIMG
HHHCHHHHHHHCHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
VAIVGMHYTGMAAARFAPGSVCGAVAETHLPLSWLTAVVVLVTLVLLMLALVISLLSRRF
HHHHHHHHHCHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQRTDVLAQSLAKANAELALATLHDPLTRLPNRILLHEHLVQNIERAQRQGQRFAVMLIN
HHHHHHHHHHHHHCCHHEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
LDGFKVINDGYGHALGDRLLVVVAERLNAHRRAHGSLARLGADEFVLVADIADPEDAAAL
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEECCCCHHHHHH
AAHLVQALAVPFLVANHELRLSSSIGIALYPEDAGSEHQLLTHADAAMTHAKHAGRNRYS
HHHHHHHHHHHHHHCCCCEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH
FFERSMTATTRDRLQLLQELPRALELGQFVLHYQPKYCAEDGRPIGAEALIRWQHPERGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHEEEECCCCCCC
VPPDSFIPLAERSGMIGLLGSWVLRQACRQMRDWRQAGHGDWRVAVNLSALQLASPSLLD
CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHCCHHHHH
EVATTLSEYALAPGQLTLEITETMAMRDAEACLRTLGQLNALGVRIAIDDFGTGYSNLLY
HHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCHHHCEEEEEEECCCCCHHHHHH
LRKLPAHELKIDRSFVQAMDGSAEDIAIVAAVVALAHTMRLQVVAEGVETLAQRNTLERL
HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GCDQLQGYLLGRPMDAERFIATVVAQRDGPRRLAS
CHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MVGTYNPGMVMLSLVVAVLASYTALYLAARTTARGGGIAAAWLMGGAIAMGIGIWSMHFV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GMLAFRLPIPVGYDLALTCYSMLAAILTSALALWLTSRANLPLLRLGLGALLMGLGIALM
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
HYMGMDALRMVPAIRYDPLLFGLSIAIAIGASGAALWIAFRLRHAGQRSSLRLIAASIMG
HHHCHHHHHHHCHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
VAIVGMHYTGMAAARFAPGSVCGAVAETHLPLSWLTAVVVLVTLVLLMLALVISLLSRRF
HHHHHHHHHCHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQRTDVLAQSLAKANAELALATLHDPLTRLPNRILLHEHLVQNIERAQRQGQRFAVMLIN
HHHHHHHHHHHHHCCHHEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
LDGFKVINDGYGHALGDRLLVVVAERLNAHRRAHGSLARLGADEFVLVADIADPEDAAAL
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEECCCCHHHHHH
AAHLVQALAVPFLVANHELRLSSSIGIALYPEDAGSEHQLLTHADAAMTHAKHAGRNRYS
HHHHHHHHHHHHHHCCCCEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH
FFERSMTATTRDRLQLLQELPRALELGQFVLHYQPKYCAEDGRPIGAEALIRWQHPERGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHEEEECCCCCCC
VPPDSFIPLAERSGMIGLLGSWVLRQACRQMRDWRQAGHGDWRVAVNLSALQLASPSLLD
CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHCCHHHHH
EVATTLSEYALAPGQLTLEITETMAMRDAEACLRTLGQLNALGVRIAIDDFGTGYSNLLY
HHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCHHHCEEEEEEECCCCCHHHHHH
LRKLPAHELKIDRSFVQAMDGSAEDIAIVAAVVALAHTMRLQVVAEGVETLAQRNTLERL
HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GCDQLQGYLLGRPMDAERFIATVVAQRDGPRRLAS
CHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]