| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is celD [H]
Identifier: 21242538
GI number: 21242538
Start: 2062123
End: 2064735
Strand: Direct
Name: celD [H]
Synonym: XAC1793
Alternate gene names: 21242538
Gene position: 2062123-2064735 (Clockwise)
Preceding gene: 21242536
Following gene: 21242539
Centisome position: 39.84
GC content: 65.94
Gene sequence:
>2613_bases TTGGACAAGCTGCTCCGTCGTACCGCCGCGCCCGTCGCGCGTCGCGCCCTCTGCCTGGCCACCGCTGCGGCGGTGCTGAT GTTGGCCGCCTGCCAAGGCAAGGACACTGCTGCCGAGGCGAGCAAGGCGGCTCCGGCCGCCGCACCTGCCGAGGCGTCGA CCGCCATCCATCCGGACCAGTGGCCGTCGCCGAAGTGGCCATTCGCGCAGGACGCGGCGCTGGAGCAGCGCATCACCGAT GTGATGGCCAAGATGAGCGTGGAAGAGAAGGTTGCCCAGACCATCCAGGGCGATATCGCCAGCATGACCCCGGACGACGT GCGCAAGTACCGTATCGGCTCGGTGCTGGCCGGCGGCAATTCCGATCCGGGCGGCAAGTACAACGCCAGCCCGGCCGAAT GGTTGAAGCTGGCCGACGCGTTCTATGAGGCGTCGATGGACACCTCCAAGGGCGGCAACGCGATTCCGATCATCTTCGGC ATCGATGCGGTGCACGGCCAGAGCAACATCGTCGGTGCCACGCTGTTTCCGCACAACATCGGCCTGGGCGCAACGCGCAA CCCGGACCTGATCAAGAAGATCGGCGAAGTCACCGCTGCCGAAACCCGCGTCACCGGCATGGAGTGGACCTTCGCGCCGA CCGTGGCCGTGCCGCAGGACGACCGCTGGGGCCGGACCTACGAAGGCTATTCCGAGTCGCCGGACGTGGTGGCCAGCTTT GCCGGCAAGATGGTCGAAGGCGTACAGGGCGTGCCGGGCACGCCGCAGTTCCTGGACGGCAGCCACGTCATTTCGTCGGT GAAGCATTTCGTCGGCGACGGCGGCACCACCGACGGCAAGGACCAGGGCGACACCAAGGTGTCCGAAGCTACCATGCGCG ATATCCACGCCGCCGGTTATCCGCCTGCGATTGCCGCTGGCGCACAGAGCGTGATGGCCTCGTTCAACAGCTTCAACGGC GAAAAGATGCACGGCAACAAGGTCATGCTGACCGACGTGCTCAAGGGCCGCATGAATTTCGGCGGATTCGTGGTCGGCGA CTGGAATGGCCACGGCCAGGTCAAGGGCTGCACCAACCAGAATTGCCCGGCCTCGTTCATCGCCGGTGTCGACATGGCGA TGGCCGCCGACAGCTGGAAGGGCATCTACGAAACCGAACTGGCGGCGGTGAAGTCCGGCCAGATTTCGGCCGAGCGTCTG GACGATGCCGTGCGCCGCATCCTGCGCGTGAAGGTGCGCCTGGGCCTGTTCGAGGCCGGCAAGCCGTCCAAGCGCCCACT CGGTGGCAAGTACGAATTGCTCGGCGCACCGGAACACCGTGCCATCGCCCGCCAGGCGGTACGTGAGTCGCTGGTGCTGC TGAAGAACCAGGCCGGCATCCTGCCGCTGAATCCGACCAGACGCGTGCTGGTGGTCGGCGATGGTGCCAACGACATGGGC AAGCAGTCCGGCGGCTGGACCCTGAACTGGCAGGGCACCGGCACCAAGCGCAGCGACTACCCCAACGGCACCACCATCTG GGAAGGCCTGGACAAGCAGATCAAGGCCGCCGGCGGCAGCGCCGAGCTGGCCGTGGATGGCGCCTACAAGACCAAGCCGG ACGTGGCCGTGGTGGTGTTCGGCGAAAATCCGTATGCCGAATTCCAGGGCGATATCGCCACCCTGCTGTACAAGCCGGGC GACGAAAGCGAACTGGCCCTGATCAAGAAACTCAAGGCCGAAGGCATCCCGGTGGTGGCGGTGTTCCTGAGCGGGCGTCC GCTGTGGATGAATCAGTACATCAACGCCTCCGACGCGTTCGTCGCTGCCTGGTTGCCGGGCTCCGAAGGCGAGGGCATTG CCGATGTGCTGCTGCGCAAGGCCGATGGGTCGGTGCAGAACGACTTCAAGGGCAAGCTCAGCTTCTCCTGGCCCAAGACC GCCGTGCAGTTCGCCAATAACGTCGGCCAGAAGGACTACGACCCGCAGTTCAAGTTCGGCTTCGGCCTGACCTACGCCGA CAAGGGCGACCTGGCAGCACTGCCGGAAGAATCCGGCGTGTCCGGCGAGCAGTCGGTAGGCGGGATGTACTTCGTGCGCG GCAAGCCTGCGCTCGGCATCGCCATGCAGCTGTCCAACGCCGGCCAGGCCAACATGCCGGCAACCACGCTGCCGGTGGGC TTGTCCGATGGCAGCCTGAAGATGACCGCAGTCGACCACAAGGCGCAGGAGGATGCGCGCCGTCTGGTGTGGTCGGGCAG TACCGCCTCCAGCGTGTTGCTGGTGTCCGCCAAGCCGGTGGACGTCTCGCGTGAAAGCAACGGCGATGTGCAGTTGCAGC TGACCCTGCGCCGCGACAGCGCGGTGACCGCGCCGGTGTGGCTGGGCGTGGGCTGTGGCGACAAGTGCGGTGGTCGTGTC GACGTCCAGAAGACCCTGGCTACGCTGCCGCAAGGCCAGTGGAAAGTGGTCGGCGTGCCGTTGAAGTGCTTCGCAGTGGC CGGCGCGGATGTGACCAAGCTGACCCAGGTCGCCAGCATCGAAAGCGCTGCCGCGCTGGACCTGTCGGTGTCCAGGGTGT CGCTGGGCGCGCTCAACGAAGCCGAAGTCACCGTCGACTGCCCGGTCAAGTAA
Upstream 100 bases:
>100_bases GCCGTTGTTGACAGGGTAGGGGAATCACGCAAGCGTACGCCGCCTAATGGCCTGCGGCGCAACGCATCGCCGTGGGAGAA CCACCCTGGAGAAACGAATC
Downstream 100 bases:
>100_bases GCAGCATTCCAGCTGGCGTGCGTGCGCGCCTGGGGGATGAGACCAAACAGCTGCGTCGCCAGTGCTGGCGGCGCGGTACA GCGGCCACCCTGATCGGTGG
Product: glucan 1,4-beta-glucosidase
Products: NA
Alternate protein names: Beta-D-glucoside glucohydrolase; Cellobiase; Gentiobiase [H]
Number of amino acids: Translated: 870; Mature: 870
Protein sequence:
>870_residues MDKLLRRTAAPVARRALCLATAAAVLMLAACQGKDTAAEASKAAPAAAPAEASTAIHPDQWPSPKWPFAQDAALEQRITD VMAKMSVEEKVAQTIQGDIASMTPDDVRKYRIGSVLAGGNSDPGGKYNASPAEWLKLADAFYEASMDTSKGGNAIPIIFG IDAVHGQSNIVGATLFPHNIGLGATRNPDLIKKIGEVTAAETRVTGMEWTFAPTVAVPQDDRWGRTYEGYSESPDVVASF AGKMVEGVQGVPGTPQFLDGSHVISSVKHFVGDGGTTDGKDQGDTKVSEATMRDIHAAGYPPAIAAGAQSVMASFNSFNG EKMHGNKVMLTDVLKGRMNFGGFVVGDWNGHGQVKGCTNQNCPASFIAGVDMAMAADSWKGIYETELAAVKSGQISAERL DDAVRRILRVKVRLGLFEAGKPSKRPLGGKYELLGAPEHRAIARQAVRESLVLLKNQAGILPLNPTRRVLVVGDGANDMG KQSGGWTLNWQGTGTKRSDYPNGTTIWEGLDKQIKAAGGSAELAVDGAYKTKPDVAVVVFGENPYAEFQGDIATLLYKPG DESELALIKKLKAEGIPVVAVFLSGRPLWMNQYINASDAFVAAWLPGSEGEGIADVLLRKADGSVQNDFKGKLSFSWPKT AVQFANNVGQKDYDPQFKFGFGLTYADKGDLAALPEESGVSGEQSVGGMYFVRGKPALGIAMQLSNAGQANMPATTLPVG LSDGSLKMTAVDHKAQEDARRLVWSGSTASSVLLVSAKPVDVSRESNGDVQLQLTLRRDSAVTAPVWLGVGCGDKCGGRV DVQKTLATLPQGQWKVVGVPLKCFAVAGADVTKLTQVASIESAAALDLSVSRVSLGALNEAEVTVDCPVK
Sequences:
>Translated_870_residues MDKLLRRTAAPVARRALCLATAAAVLMLAACQGKDTAAEASKAAPAAAPAEASTAIHPDQWPSPKWPFAQDAALEQRITD VMAKMSVEEKVAQTIQGDIASMTPDDVRKYRIGSVLAGGNSDPGGKYNASPAEWLKLADAFYEASMDTSKGGNAIPIIFG IDAVHGQSNIVGATLFPHNIGLGATRNPDLIKKIGEVTAAETRVTGMEWTFAPTVAVPQDDRWGRTYEGYSESPDVVASF AGKMVEGVQGVPGTPQFLDGSHVISSVKHFVGDGGTTDGKDQGDTKVSEATMRDIHAAGYPPAIAAGAQSVMASFNSFNG EKMHGNKVMLTDVLKGRMNFGGFVVGDWNGHGQVKGCTNQNCPASFIAGVDMAMAADSWKGIYETELAAVKSGQISAERL DDAVRRILRVKVRLGLFEAGKPSKRPLGGKYELLGAPEHRAIARQAVRESLVLLKNQAGILPLNPTRRVLVVGDGANDMG KQSGGWTLNWQGTGTKRSDYPNGTTIWEGLDKQIKAAGGSAELAVDGAYKTKPDVAVVVFGENPYAEFQGDIATLLYKPG DESELALIKKLKAEGIPVVAVFLSGRPLWMNQYINASDAFVAAWLPGSEGEGIADVLLRKADGSVQNDFKGKLSFSWPKT AVQFANNVGQKDYDPQFKFGFGLTYADKGDLAALPEESGVSGEQSVGGMYFVRGKPALGIAMQLSNAGQANMPATTLPVG LSDGSLKMTAVDHKAQEDARRLVWSGSTASSVLLVSAKPVDVSRESNGDVQLQLTLRRDSAVTAPVWLGVGCGDKCGGRV DVQKTLATLPQGQWKVVGVPLKCFAVAGADVTKLTQVASIESAAALDLSVSRVSLGALNEAEVTVDCPVK >Mature_870_residues MDKLLRRTAAPVARRALCLATAAAVLMLAACQGKDTAAEASKAAPAAAPAEASTAIHPDQWPSPKWPFAQDAALEQRITD VMAKMSVEEKVAQTIQGDIASMTPDDVRKYRIGSVLAGGNSDPGGKYNASPAEWLKLADAFYEASMDTSKGGNAIPIIFG IDAVHGQSNIVGATLFPHNIGLGATRNPDLIKKIGEVTAAETRVTGMEWTFAPTVAVPQDDRWGRTYEGYSESPDVVASF AGKMVEGVQGVPGTPQFLDGSHVISSVKHFVGDGGTTDGKDQGDTKVSEATMRDIHAAGYPPAIAAGAQSVMASFNSFNG EKMHGNKVMLTDVLKGRMNFGGFVVGDWNGHGQVKGCTNQNCPASFIAGVDMAMAADSWKGIYETELAAVKSGQISAERL DDAVRRILRVKVRLGLFEAGKPSKRPLGGKYELLGAPEHRAIARQAVRESLVLLKNQAGILPLNPTRRVLVVGDGANDMG KQSGGWTLNWQGTGTKRSDYPNGTTIWEGLDKQIKAAGGSAELAVDGAYKTKPDVAVVVFGENPYAEFQGDIATLLYKPG DESELALIKKLKAEGIPVVAVFLSGRPLWMNQYINASDAFVAAWLPGSEGEGIADVLLRKADGSVQNDFKGKLSFSWPKT AVQFANNVGQKDYDPQFKFGFGLTYADKGDLAALPEESGVSGEQSVGGMYFVRGKPALGIAMQLSNAGQANMPATTLPVG LSDGSLKMTAVDHKAQEDARRLVWSGSTASSVLLVSAKPVDVSRESNGDVQLQLTLRRDSAVTAPVWLGVGCGDKCGGRV DVQKTLATLPQGQWKVVGVPLKCFAVAGADVTKLTQVASIESAAALDLSVSRVSLGALNEAEVTVDCPVK
Specific function: Unknown
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788453, Length=662, Percent_Identity=29.4561933534743, Blast_Score=221, Evalue=2e-58,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019800 - InterPro: IPR002772 - InterPro: IPR001764 - InterPro: IPR017853 [H]
Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]
EC number: =3.2.1.21 [H]
Molecular weight: Translated: 91722; Mature: 91722
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKLLRRTAAPVARRALCLATAAAVLMLAACQGKDTAAEASKAAPAAAPAEASTAIHPDQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC WPSPKWPFAQDAALEQRITDVMAKMSVEEKVAQTIQGDIASMTPDDVRKYRIGSVLAGGN CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHCEEEECCC SDPGGKYNASPAEWLKLADAFYEASMDTSKGGNAIPIIFGIDAVHGQSNIVGATLFPHNI CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCCEEEEEECCCCC GLGATRNPDLIKKIGEVTAAETRVTGMEWTFAPTVAVPQDDRWGRTYEGYSESPDVVASF CCCCCCCHHHHHHHHHHHHHHHEECCCEEEECCEEECCCCCCCCCCCCCCCCCHHHHHHH AGKMVEGVQGVPGTPQFLDGSHVISSVKHFVGDGGTTDGKDQGDTKVSEATMRDIHAAGY HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCC PPAIAAGAQSVMASFNSFNGEKMHGNKVMLTDVLKGRMNFGGFVVGDWNGHGQVKGCTNQ CCHHHHHHHHHHHHHHCCCCCEECCCEEEEHHHHHCCCCCCCEEEECCCCCCEEECCCCC NCPASFIAGVDMAMAADSWKGIYETELAAVKSGQISAERLDDAVRRILRVKVRLGLFEAG CCCHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCEEECC KPSKRPLGGKYELLGAPEHRAIARQAVRESLVLLKNQAGILPLNPTRRVLVVGDGANDMG CCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEECCCCCCC KQSGGWTLNWQGTGTKRSDYPNGTTIWEGLDKQIKAAGGSAELAVDGAYKTKPDVAVVVF CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEE GENPYAEFQGDIATLLYKPGDESELALIKKLKAEGIPVVAVFLSGRPLWMNQYINASDAF CCCCCHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCCCE VAAWLPGSEGEGIADVLLRKADGSVQNDFKGKLSFSWPKTAVQFANNVGQKDYDPQFKFG EEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCCCCEEEE FGLTYADKGDLAALPEESGVSGEQSVGGMYFVRGKPALGIAMQLSNAGQANMPATTLPVG EEEEECCCCCEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCEEEEEE LSDGSLKMTAVDHKAQEDARRLVWSGSTASSVLLVSAKPVDVSRESNGDVQLQLTLRRDS CCCCCEEEEEECCHHHHHHHHEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCC AVTAPVWLGVGCGDKCGGRVDVQKTLATLPQGQWKVVGVPLKCFAVAGADVTKLTQVASI CEECCEEEECCCCCCCCCEEEHHHHHHHCCCCCEEEEEECEEEEEECCCCHHHHHHHHHH ESAAALDLSVSRVSLGALNEAEVTVDCPVK CCHHEEEEEEEEEEECCCCCCEEEEECCCC >Mature Secondary Structure MDKLLRRTAAPVARRALCLATAAAVLMLAACQGKDTAAEASKAAPAAAPAEASTAIHPDQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC WPSPKWPFAQDAALEQRITDVMAKMSVEEKVAQTIQGDIASMTPDDVRKYRIGSVLAGGN CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHCEEEECCC SDPGGKYNASPAEWLKLADAFYEASMDTSKGGNAIPIIFGIDAVHGQSNIVGATLFPHNI CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCCEEEEEECCCCC GLGATRNPDLIKKIGEVTAAETRVTGMEWTFAPTVAVPQDDRWGRTYEGYSESPDVVASF CCCCCCCHHHHHHHHHHHHHHHEECCCEEEECCEEECCCCCCCCCCCCCCCCCHHHHHHH AGKMVEGVQGVPGTPQFLDGSHVISSVKHFVGDGGTTDGKDQGDTKVSEATMRDIHAAGY HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCC PPAIAAGAQSVMASFNSFNGEKMHGNKVMLTDVLKGRMNFGGFVVGDWNGHGQVKGCTNQ CCHHHHHHHHHHHHHHCCCCCEECCCEEEEHHHHHCCCCCCCEEEECCCCCCEEECCCCC NCPASFIAGVDMAMAADSWKGIYETELAAVKSGQISAERLDDAVRRILRVKVRLGLFEAG CCCHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCEEECC KPSKRPLGGKYELLGAPEHRAIARQAVRESLVLLKNQAGILPLNPTRRVLVVGDGANDMG CCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEECCCCCCC KQSGGWTLNWQGTGTKRSDYPNGTTIWEGLDKQIKAAGGSAELAVDGAYKTKPDVAVVVF CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEE GENPYAEFQGDIATLLYKPGDESELALIKKLKAEGIPVVAVFLSGRPLWMNQYINASDAF CCCCCHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCCCE VAAWLPGSEGEGIADVLLRKADGSVQNDFKGKLSFSWPKTAVQFANNVGQKDYDPQFKFG EEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCCCCEEEE FGLTYADKGDLAALPEESGVSGEQSVGGMYFVRGKPALGIAMQLSNAGQANMPATTLPVG EEEEECCCCCEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCEEEEEE LSDGSLKMTAVDHKAQEDARRLVWSGSTASSVLLVSAKPVDVSRESNGDVQLQLTLRRDS CCCCCEEEEEECCHHHHHHHHEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCC AVTAPVWLGVGCGDKCGGRVDVQKTLATLPQGQWKVVGVPLKCFAVAGADVTKLTQVASI CEECCEEEECCCCCCCCCEEEHHHHHHHCCCCCEEEEEECEEEEEECCCCHHHHHHHHHH ESAAALDLSVSRVSLGALNEAEVTVDCPVK CCHHEEEEEEEEEEECCCCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]