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The map label for this gene is exoD [H]

Identifier: 21242457

GI number: 21242457

Start: 1967921

End: 1968538

Strand: Reverse

Name: exoD [H]

Synonym: XAC1708

Alternate gene names: 21242457

Gene position: 1968538-1967921 (Counterclockwise)

Preceding gene: 21242458

Following gene: 21242454

Centisome position: 38.04

GC content: 63.75

Gene sequence:

>618_bases
ATGCGCTACCGCAACGAAGGCATCCGCAGCCTGCTGGCAGCCTTCAGCGAAGGTGATCCGGACCAGGTGTTGCGCGTTCG
CGAGATCTTGGCCGACCTGCAGCAAAGCGCCTTCGGCGTGTTCCTGTTTCTTGCGATCCTGCCCTCGTTCATTCCGATTC
CCGGCGTCGCCGGTGGCATCAGCGGACCACTGACGATACTGATCGGGCTGCAGATGATGTGCTGCCTGCGCAAGCCGTGG
GTACCGCGCTTCATCGGCGAACGTGGGCCGCGCCGTCGGACCAGTCAGCGCTTCGTGGCCAAACTGGGACCGACGCTGCA
ACGCCTGGATCGCCTGCTCAAACCGCGGTTGCACGGCATGCTGGATGGGATGCCGGCGCAACTACTCACCGGCTTGCTAT
TGGTGTTGGTCGGCATCTTGCTGACGCTGCCGATCCCCTTCACCAACTATATTTTCGGCTTGATCCTGCTGCTGTTCGCG
CTGGCCCTGCTCGAGCGCGACGGCGCGCTCATGCTGGTGGGCTGGGCAGCTGCGCTGATCTCGGTGGCCGTGTTCGGCGT
CACCTCCGACCAGCTGGTGGATCTGATTCGCGATTGGTGGCCGGACGCATGGCGCTGA

Upstream 100 bases:

>100_bases
GCGCGCGTGGACAAGTTGCTGCTGAGCCGGGTGGGCGACGAGGACAGCGATGACATCGTCGGGTGACGGCAGTGCGCCGC
GCGATGATGCCAACGAGCAG

Downstream 100 bases:

>100_bases
GCGCAGCGCGTCCGGCGCGTCGCTTGCGACGCGGTTACTTCAGATCGACCACGCGGTTGTCCGACAGGCTGCCGGTATCG
TCGGTGACCGCCGTCATCAC

Product: ExoD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MRYRNEGIRSLLAAFSEGDPDQVLRVREILADLQQSAFGVFLFLAILPSFIPIPGVAGGISGPLTILIGLQMMCCLRKPW
VPRFIGERGPRRRTSQRFVAKLGPTLQRLDRLLKPRLHGMLDGMPAQLLTGLLLVLVGILLTLPIPFTNYIFGLILLLFA
LALLERDGALMLVGWAAALISVAVFGVTSDQLVDLIRDWWPDAWR

Sequences:

>Translated_205_residues
MRYRNEGIRSLLAAFSEGDPDQVLRVREILADLQQSAFGVFLFLAILPSFIPIPGVAGGISGPLTILIGLQMMCCLRKPW
VPRFIGERGPRRRTSQRFVAKLGPTLQRLDRLLKPRLHGMLDGMPAQLLTGLLLVLVGILLTLPIPFTNYIFGLILLLFA
LALLERDGALMLVGWAAALISVAVFGVTSDQLVDLIRDWWPDAWR
>Mature_205_residues
MRYRNEGIRSLLAAFSEGDPDQVLRVREILADLQQSAFGVFLFLAILPSFIPIPGVAGGISGPLTILIGLQMMCCLRKPW
VPRFIGERGPRRRTSQRFVAKLGPTLQRLDRLLKPRLHGMLDGMPAQLLTGLLLVLVGILLTLPIPFTNYIFGLILLLFA
LALLERDGALMLVGWAAALISVAVFGVTSDQLVDLIRDWWPDAWR

Specific function: Required for nodule invasion. Mutations in this gene lead to sensitivity to alkaline conditions which prevents nodule invasion [H]

COG id: COG3932

COG function: function code R; Uncharacterized ABC-type transport system, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To Synechocystis PCC 6803 slr1875 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010331 [H]

Pfam domain/function: PF06055 ExoD [H]

EC number: NA

Molecular weight: Translated: 22769; Mature: 22769

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYRNEGIRSLLAAFSEGDPDQVLRVREILADLQQSAFGVFLFLAILPSFIPIPGVAGGI
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SGPLTILIGLQMMCCLRKPWVPRFIGERGPRRRTSQRFVAKLGPTLQRLDRLLKPRLHGM
CHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
LDGMPAQLLTGLLLVLVGILLTLPIPFTNYIFGLILLLFALALLERDGALMLVGWAAALI
HCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
SVAVFGVTSDQLVDLIRDWWPDAWR
HHHHHCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRYRNEGIRSLLAAFSEGDPDQVLRVREILADLQQSAFGVFLFLAILPSFIPIPGVAGGI
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SGPLTILIGLQMMCCLRKPWVPRFIGERGPRRRTSQRFVAKLGPTLQRLDRLLKPRLHGM
CHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
LDGMPAQLLTGLLLVLVGILLTLPIPFTNYIFGLILLLFALALLERDGALMLVGWAAALI
HCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
SVAVFGVTSDQLVDLIRDWWPDAWR
HHHHHCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1748284; 11481430 [H]