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The map label for this gene is 21241692

Identifier: 21241692

GI number: 21241692

Start: 1084577

End: 1085242

Strand: Reverse

Name: 21241692

Synonym: XAC0922

Alternate gene names: NA

Gene position: 1085242-1084577 (Counterclockwise)

Preceding gene: 21241695

Following gene: 21241691

Centisome position: 20.97

GC content: 68.02

Gene sequence:

>666_bases
GTGCGGCCCGCCGATCATACCCACGCCACGCCCGTGCGGGCGCCTGTCAACCGAATCCGCGCTCGCCCGTTGACGTCGTA
TCGTCTCCGCGGAAGCTACGCTGTGCTGGTGGGAACTCCTTTCGATCCGCAAGCTACCGCACCGGCCGCCACCGCGCCGG
TGTCGCTGGACGCCTTTCTGGCCGGCATCGGGCCGCGTGCGTTCCGTTTTGCCGAGGCCGGCCTGCGGCACCGCGAAGAT
GCGCTGGACGCCGTGCAGGACGCCATGGTGAAGCTGCTGGGCTATCGCGAACGGCCAGCCGAGGAATGGACGCCGCTGTT
CTGGAGCATCCTGCGCAGCCGCATCATCGACCTGCAGCGGCGACGCAGCTTCCGCCTGAAGTTCTGGGCACCGGCCGAGC
GCGCCGACGACGAAGGCCCGATCGACTGGGCCGACCCCGGCACCGGACCGGTCGACGAACAACAGCATCAACAGGCCTAC
CAACGGCTGGTCGATGCATTGCGCACACTGCCGGCGCGCCAGCGCGAAGCCTTCACCCTGCGCGTGCTCGAAGACCTGGA
CGTGGCCACCACCGCCAAGGCGATGGGCTGCTCCGAAGGCTCGGTCAAAACCCACCTGTCGCGCGCGCGCGACGCGTTGC
AAAAACAGTTCGAGGATTTCCTGTGA

Upstream 100 bases:

>100_bases
CCGGCACCCGCGAGATGATCACGTGGCCGGCAATGGCCGCCAGCATGAAGATGTACAGCGCTACGAATCCGTCGCTCATC
GTCTCTGGCTCCACTGGTCG

Downstream 100 bases:

>100_bases
ACCGCTCCCACGACACCGCCCGGCTGGATGCGCAGCTGCGCCGGCTGCATGCCACCGCGCTGACCAGCCTGCCGCCGCAG
ACACTGGCGCGCCTGCGCCA

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-E Factor; Sigma-; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Transcription Regulator Protein; RNA Polymerase Sigma-70 Factor; Specialized Sigma Subunits Of RNA Polymerase; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MRPADHTHATPVRAPVNRIRARPLTSYRLRGSYAVLVGTPFDPQATAPAATAPVSLDAFLAGIGPRAFRFAEAGLRHRED
ALDAVQDAMVKLLGYRERPAEEWTPLFWSILRSRIIDLQRRRSFRLKFWAPAERADDEGPIDWADPGTGPVDEQQHQQAY
QRLVDALRTLPARQREAFTLRVLEDLDVATTAKAMGCSEGSVKTHLSRARDALQKQFEDFL

Sequences:

>Translated_221_residues
MRPADHTHATPVRAPVNRIRARPLTSYRLRGSYAVLVGTPFDPQATAPAATAPVSLDAFLAGIGPRAFRFAEAGLRHRED
ALDAVQDAMVKLLGYRERPAEEWTPLFWSILRSRIIDLQRRRSFRLKFWAPAERADDEGPIDWADPGTGPVDEQQHQQAY
QRLVDALRTLPARQREAFTLRVLEDLDVATTAKAMGCSEGSVKTHLSRARDALQKQFEDFL
>Mature_221_residues
MRPADHTHATPVRAPVNRIRARPLTSYRLRGSYAVLVGTPFDPQATAPAATAPVSLDAFLAGIGPRAFRFAEAGLRHRED
ALDAVQDAMVKLLGYRERPAEEWTPLFWSILRSRIIDLQRRRSFRLKFWAPAERADDEGPIDWADPGTGPVDEQQHQQAY
QRLVDALRTLPARQREAFTLRVLEDLDVATTAKAMGCSEGSVKTHLSRARDALQKQFEDFL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24869; Mature: 24869

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPADHTHATPVRAPVNRIRARPLTSYRLRGSYAVLVGTPFDPQATAPAATAPVSLDAFL
CCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHH
AGIGPRAFRFAEAGLRHREDALDAVQDAMVKLLGYRERPAEEWTPLFWSILRSRIIDLQR
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
RRSFRLKFWAPAERADDEGPIDWADPGTGPVDEQQHQQAYQRLVDALRTLPARQREAFTL
HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
RVLEDLDVATTAKAMGCSEGSVKTHLSRARDALQKQFEDFL
HHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRPADHTHATPVRAPVNRIRARPLTSYRLRGSYAVLVGTPFDPQATAPAATAPVSLDAFL
CCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHH
AGIGPRAFRFAEAGLRHREDALDAVQDAMVKLLGYRERPAEEWTPLFWSILRSRIIDLQR
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
RRSFRLKFWAPAERADDEGPIDWADPGTGPVDEQQHQQAYQRLVDALRTLPARQREAFTL
HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
RVLEDLDVATTAKAMGCSEGSVKTHLSRARDALQKQFEDFL
HHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA