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The map label for this gene is yncD [C]

Identifier: 21241622

GI number: 21241622

Start: 1011721

End: 1013925

Strand: Direct

Name: yncD [C]

Synonym: XAC0852

Alternate gene names: 21241622

Gene position: 1011721-1013925 (Clockwise)

Preceding gene: 21241614

Following gene: 21241623

Centisome position: 19.55

GC content: 63.99

Gene sequence:

>2205_bases
ATGTGCGACGGCCTTCGCGCGTCGCTGGCACGCGATGTGCGTGTGCAGCATCCAGCCGCGCCACGATGCGCAGACGATCA
AGCGGAGAACACGATGTCCACGAACAGACGCGCAGTGCTGTACTCGGCAATTGCCTGGGTGATGGCCGCTTCGGCGCAGC
TGCCGGCGCAAGCGCAGCCGACCGATGCCGAGACCGATGCACAGGTGCACACGTTGCAGGCGGTGACGATCAAGGCCGAG
CGCAAGCCGGAACAGGCGCAAGCCGAGCAAGCCTTGCAGACGGTTGCCGGCAACACGGCGCTGGTGGACAACGAGCAGGT
GGAACGTGGGCGCGCTGCCAGCGCCGAAGACGTGCTGGCTTTCCAGCCGGGCGTATTCGCGCAGTCCACCAGCGGCAACG
CGGCCGCCAAGATCTCCATTCGCGGCTCCGGCCTGAATACCTTTTATGGCGGCTACGTGCTGGGCACCAAGTTTCTGTTC
GACGGTCTGCCGATCACCGGTCCCGGGGGAACCCAGGAAGATCTGCTCAGCATCGCCGGAGTGAATTACACCGAAGTGCT
GTACGGCGCCAACGCCTTTCAATATGCGGCCACCAGTCTTGGCGGCGCGATCAACTTCGTCACCCACACCGGGCAGACCT
CACCGGGAACATATCTGCGGGTAGAGGCGGGGAGCTACGGCTATCGCAAGCAGCAGATCAGCAACGGCGGTGCGGCAGGG
AATTTCGATTGGTACGTGTCGCTGCTGCACAACAGCCGCGACGGCTACCAGGACCTTACCGACACCAACGGCCGCGAGCT
GGTCGCCAATCTTGGGTATCGCTTCGGCCCGCGCCTGGATACGCGCCTGCTGCTGCGTTACCGCGAAGAAGAGTTGATCA
ACGGCGGCACGCTGACCCTGGCGCAGATCAACAGCGGCTCGCGTGCCAACCCGGCCCCCTATGGCCGCAAGAAAGGCGGC
ACCACGCTGGTGGGTAGCAAAACCACCTATGTCTTCGACGATGACGCGCGCCTGGAGTTGGGGGTGGACCTCAACAACTA
TCCGCTCTACAACAGCTGGCGTTATTCCACCACGCCGAACCTGTGGCGATCGACCGACATCAACACCAGCGTGCGTTACT
TGCGCAGCGGCGACATCTTGTTCGGCCGCAACCTGGACACCAGCGTGACCTGGAGCGATACGCGGCTGGCGTTCGGCGAT
GCGCGCACCCACGACCGCGACAGCTGGCGCCTGCTCAAGGAGGTGCGCTATACCGGGTCGCGCGACACCGTGCTGGCGCT
CGGTGGCGAGTTGCAACTGGATGCGTCCTCATGGCTGTCGGCAGGCGTGTCGCTGATCAATATCGATCGGGACGTGCGCG
TGGTGCAGTCGACCACCGCCAACACCAGCGTGTATCCGCAGCGTTATGCATTGGATACATGGTACGCAGCCCCACGCCTG
GGGCTGCGCTATCGGCTGACGCCGGATCTGCAGGCATTTGCCAATGTGAGCCGCTCGATCGATCCGCCGGTCACCTGGCA
GATCAGCGGCGGCGGGGTGGCCACACCGTTCGCGCGGCCGTTGGTGCCGCAAAAAGCCACCACCGCCGAAGCGGGCGTCC
GCGGTAGCCACGGCATCCTCGATGGCAGCCTCACCATCTACCGCTCCTGGATCAACGACGAACTGCTGACCGTGGTGACC
CAGCAGGCCACTGCCAGTACCGATGCGGTGGTGGCCAACGCCAACGCCGGGCCGACCGTGCATCAGGGCATCGAGGCCGC
GCTGAGTACGCGCGTATGGGACGGCGACGATGGCAGCGGGTTGAGTCTGCGCCAGGCCTATACCCTCAACGACTTTCATT
ACCGCCGCGATGCCGCGTTCGCGCAGAATGCGTTGCCCGGCTTGCCGCGGCAGGTCTATCAGGCCGAGTTGCAATACGCG
CATGGCAGCGGCTTTTATGCGCATCTCAATGTGCGCGCAGCGTCCAGCTATTACGTCGATTTCGCCAATACGCTCAGGGC
GCCCGGTTACGGCTTGCTGGGCGCCAAGCTCGGTTACGGCTTGCCGAGCGGGCGCTGGAGCGCCTGGGTCGATTTACGCA
ACCTGGCGAACAAACATTACGCCACTGCCACCAGCACCGCCTACGACCTGCAAGGGCGCGATTCCAATGTGTTCTATGTC
GGCGACGGTTTCAGCGTTTTTGCCGGCGCATCGCTTCGCTTTTGA

Upstream 100 bases:

>100_bases
ACCGCGCGAAAAATGTTGGTGGAGAAACACCGAATCAGCATTTCGCCGTCCTGCAGGCACGATGCTGAGCGTTATCGACG
GCATTTTTGCGCGTGATTCC

Downstream 100 bases:

>100_bases
GTGCGGCCGCTGCTTGCCGTCGCCGATGAGCGCATGTGTTCGTCGCGTTTCCGAGGTCGTTGCAAATGTGCATGCCATCA
GGTGATTTCCGGGGATTATC

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Protein; Outer Membrane Receptor For Iron Transport; NB-Dependent Receptor Domain Protein; Outer Membrane Siderophore Receptor; NB-Dependent Receptor Plug; Nb-Dependent Receptor; NB Dependent Receptor; NB-Dependent Receptor-Like Protein; Ferrienterobactin-Like Protein; NB-Dependent Receptor Plug Domain-Containing; Ferrienterobactin-Like Protein Containing nB Receptor; NB-Dependent Siderophore Receptor; Outer Membrane Receptor Protein Mostly Fe Transport; NB-Dependent Receptor Family

Number of amino acids: Translated: 734; Mature: 734

Protein sequence:

>734_residues
MCDGLRASLARDVRVQHPAAPRCADDQAENTMSTNRRAVLYSAIAWVMAASAQLPAQAQPTDAETDAQVHTLQAVTIKAE
RKPEQAQAEQALQTVAGNTALVDNEQVERGRAASAEDVLAFQPGVFAQSTSGNAAAKISIRGSGLNTFYGGYVLGTKFLF
DGLPITGPGGTQEDLLSIAGVNYTEVLYGANAFQYAATSLGGAINFVTHTGQTSPGTYLRVEAGSYGYRKQQISNGGAAG
NFDWYVSLLHNSRDGYQDLTDTNGRELVANLGYRFGPRLDTRLLLRYREEELINGGTLTLAQINSGSRANPAPYGRKKGG
TTLVGSKTTYVFDDDARLELGVDLNNYPLYNSWRYSTTPNLWRSTDINTSVRYLRSGDILFGRNLDTSVTWSDTRLAFGD
ARTHDRDSWRLLKEVRYTGSRDTVLALGGELQLDASSWLSAGVSLINIDRDVRVVQSTTANTSVYPQRYALDTWYAAPRL
GLRYRLTPDLQAFANVSRSIDPPVTWQISGGGVATPFARPLVPQKATTAEAGVRGSHGILDGSLTIYRSWINDELLTVVT
QQATASTDAVVANANAGPTVHQGIEAALSTRVWDGDDGSGLSLRQAYTLNDFHYRRDAAFAQNALPGLPRQVYQAELQYA
HGSGFYAHLNVRAASSYYVDFANTLRAPGYGLLGAKLGYGLPSGRWSAWVDLRNLANKHYATATSTAYDLQGRDSNVFYV
GDGFSVFAGASLRF

Sequences:

>Translated_734_residues
MCDGLRASLARDVRVQHPAAPRCADDQAENTMSTNRRAVLYSAIAWVMAASAQLPAQAQPTDAETDAQVHTLQAVTIKAE
RKPEQAQAEQALQTVAGNTALVDNEQVERGRAASAEDVLAFQPGVFAQSTSGNAAAKISIRGSGLNTFYGGYVLGTKFLF
DGLPITGPGGTQEDLLSIAGVNYTEVLYGANAFQYAATSLGGAINFVTHTGQTSPGTYLRVEAGSYGYRKQQISNGGAAG
NFDWYVSLLHNSRDGYQDLTDTNGRELVANLGYRFGPRLDTRLLLRYREEELINGGTLTLAQINSGSRANPAPYGRKKGG
TTLVGSKTTYVFDDDARLELGVDLNNYPLYNSWRYSTTPNLWRSTDINTSVRYLRSGDILFGRNLDTSVTWSDTRLAFGD
ARTHDRDSWRLLKEVRYTGSRDTVLALGGELQLDASSWLSAGVSLINIDRDVRVVQSTTANTSVYPQRYALDTWYAAPRL
GLRYRLTPDLQAFANVSRSIDPPVTWQISGGGVATPFARPLVPQKATTAEAGVRGSHGILDGSLTIYRSWINDELLTVVT
QQATASTDAVVANANAGPTVHQGIEAALSTRVWDGDDGSGLSLRQAYTLNDFHYRRDAAFAQNALPGLPRQVYQAELQYA
HGSGFYAHLNVRAASSYYVDFANTLRAPGYGLLGAKLGYGLPSGRWSAWVDLRNLANKHYATATSTAYDLQGRDSNVFYV
GDGFSVFAGASLRF
>Mature_734_residues
MCDGLRASLARDVRVQHPAAPRCADDQAENTMSTNRRAVLYSAIAWVMAASAQLPAQAQPTDAETDAQVHTLQAVTIKAE
RKPEQAQAEQALQTVAGNTALVDNEQVERGRAASAEDVLAFQPGVFAQSTSGNAAAKISIRGSGLNTFYGGYVLGTKFLF
DGLPITGPGGTQEDLLSIAGVNYTEVLYGANAFQYAATSLGGAINFVTHTGQTSPGTYLRVEAGSYGYRKQQISNGGAAG
NFDWYVSLLHNSRDGYQDLTDTNGRELVANLGYRFGPRLDTRLLLRYREEELINGGTLTLAQINSGSRANPAPYGRKKGG
TTLVGSKTTYVFDDDARLELGVDLNNYPLYNSWRYSTTPNLWRSTDINTSVRYLRSGDILFGRNLDTSVTWSDTRLAFGD
ARTHDRDSWRLLKEVRYTGSRDTVLALGGELQLDASSWLSAGVSLINIDRDVRVVQSTTANTSVYPQRYALDTWYAAPRL
GLRYRLTPDLQAFANVSRSIDPPVTWQISGGGVATPFARPLVPQKATTAEAGVRGSHGILDGSLTIYRSWINDELLTVVT
QQATASTDAVVANANAGPTVHQGIEAALSTRVWDGDDGSGLSLRQAYTLNDFHYRRDAAFAQNALPGLPRQVYQAELQYA
HGSGFYAHLNVRAASSYYVDFANTLRAPGYGLLGAKLGYGLPSGRWSAWVDLRNLANKHYATATSTAYDLQGRDSNVFYV
GDGFSVFAGASLRF

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 79568; Mature: 79568

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCDGLRASLARDVRVQHPAAPRCADDQAENTMSTNRRAVLYSAIAWVMAASAQLPAQAQP
CCCCHHHHHHHCCEECCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC
TDAETDAQVHTLQAVTIKAERKPEQAQAEQALQTVAGNTALVDNEQVERGRAASAEDVLA
CCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCCEEE
FQPGVFAQSTSGNAAAKISIRGSGLNTFYGGYVLGTKFLFDGLPITGPGGTQEDLLSIAG
ECCCCEEECCCCCEEEEEEEECCCCCCCCCCCCEEHHHHHCCCCCCCCCCCHHHHHHHCC
VNYTEVLYGANAFQYAATSLGGAINFVTHTGQTSPGTYLRVEAGSYGYRKQQISNGGAAG
CCHHHHEECCCHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECCCCCCHHHHHCCCCCCC
NFDWYVSLLHNSRDGYQDLTDTNGRELVANLGYRFGPRLDTRLLLRYREEELINGGTLTL
CHHEEEEEECCCCCCCCHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
AQINSGSRANPAPYGRKKGGTTLVGSKTTYVFDDDARLELGVDLNNYPLYNSWRYSTTPN
EEECCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCEEEEEEECCCCCCCCCEEECCCCC
LWRSTDINTSVRYLRSGDILFGRNLDTSVTWSDTRLAFGDARTHDRDSWRLLKEVRYTGS
CEECCCCCCHHHEEECCCEEEECCCCCEEEECCCEEEECCCCCCCCHHHHHHHHHHCCCC
RDTVLALGGELQLDASSWLSAGVSLINIDRDVRVVQSTTANTSVYPQRYALDTWYAAPRL
CCEEEEECCEEEECHHHHHHCCEEEEEECCCEEEEEECCCCCCCCCCCEECHHHHCCCCC
GLRYRLTPDLQAFANVSRSIDPPVTWQISGGGVATPFARPLVPQKATTAEAGVRGSHGIL
CEEEEECCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEE
DGSLTIYRSWINDELLTVVTQQATASTDAVVANANAGPTVHQGIEAALSTRVWDGDDGSG
CCCEEEEEEHHCCCCEEHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHEEECCCCCCC
LSLRQAYTLNDFHYRRDAAFAQNALPGLPRQVYQAELQYAHGSGFYAHLNVRAASSYYVD
CEEEEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHEECCCCEEEEEEEEECCEEEEE
FANTLRAPGYGLLGAKLGYGLPSGRWSAWVDLRNLANKHYATATSTAYDLQGRDSNVFYV
HHHHHCCCCCCEEHHHHCCCCCCCCHHHHHHHHHHCCCCEEEECCCEEEECCCCCCEEEE
GDGFSVFAGASLRF
ECCCEEECCCEECC
>Mature Secondary Structure
MCDGLRASLARDVRVQHPAAPRCADDQAENTMSTNRRAVLYSAIAWVMAASAQLPAQAQP
CCCCHHHHHHHCCEECCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC
TDAETDAQVHTLQAVTIKAERKPEQAQAEQALQTVAGNTALVDNEQVERGRAASAEDVLA
CCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCCEEE
FQPGVFAQSTSGNAAAKISIRGSGLNTFYGGYVLGTKFLFDGLPITGPGGTQEDLLSIAG
ECCCCEEECCCCCEEEEEEEECCCCCCCCCCCCEEHHHHHCCCCCCCCCCCHHHHHHHCC
VNYTEVLYGANAFQYAATSLGGAINFVTHTGQTSPGTYLRVEAGSYGYRKQQISNGGAAG
CCHHHHEECCCHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECCCCCCHHHHHCCCCCCC
NFDWYVSLLHNSRDGYQDLTDTNGRELVANLGYRFGPRLDTRLLLRYREEELINGGTLTL
CHHEEEEEECCCCCCCCHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
AQINSGSRANPAPYGRKKGGTTLVGSKTTYVFDDDARLELGVDLNNYPLYNSWRYSTTPN
EEECCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCEEEEEEECCCCCCCCCEEECCCCC
LWRSTDINTSVRYLRSGDILFGRNLDTSVTWSDTRLAFGDARTHDRDSWRLLKEVRYTGS
CEECCCCCCHHHEEECCCEEEECCCCCEEEECCCEEEECCCCCCCCHHHHHHHHHHCCCC
RDTVLALGGELQLDASSWLSAGVSLINIDRDVRVVQSTTANTSVYPQRYALDTWYAAPRL
CCEEEEECCEEEECHHHHHHCCEEEEEECCCEEEEEECCCCCCCCCCCEECHHHHCCCCC
GLRYRLTPDLQAFANVSRSIDPPVTWQISGGGVATPFARPLVPQKATTAEAGVRGSHGIL
CEEEEECCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEE
DGSLTIYRSWINDELLTVVTQQATASTDAVVANANAGPTVHQGIEAALSTRVWDGDDGSG
CCCEEEEEEHHCCCCEEHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHEEECCCCCCC
LSLRQAYTLNDFHYRRDAAFAQNALPGLPRQVYQAELQYAHGSGFYAHLNVRAASSYYVD
CEEEEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHEECCCCEEEEEEEEECCEEEEE
FANTLRAPGYGLLGAKLGYGLPSGRWSAWVDLRNLANKHYATATSTAYDLQGRDSNVFYV
HHHHHCCCCCCEEHHHHCCCCCCCCHHHHHHHHHHCCCCEEEECCCEEEECCCCCCEEEE
GDGFSVFAGASLRF
ECCCEEECCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA