| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is ybbP [H]
Identifier: 21241601
GI number: 21241601
Start: 991356
End: 993839
Strand: Reverse
Name: ybbP [H]
Synonym: XAC0831
Alternate gene names: 21241601
Gene position: 993839-991356 (Counterclockwise)
Preceding gene: 21241602
Following gene: 21241600
Centisome position: 19.2
GC content: 68.48
Gene sequence:
>2484_bases ATGAACGTCGTGCGACAAGCCGCGCGCGCAGTACGCCGCGAATTCCTGGCCGGGGACCTGCTGACCGTGTTCGCCGCGCT GGTGCTGGGCGTGGCGGTGATGACCGCGGTGGGCACCCTGGTCGACCGGGTGACGCTCGCGCTGACCTCCAGCGCGGCCG AAGTGCTCGGCGGCGATCTGGGCGTGACCGGGCGGCAGGAAATCCCGGCCGACTTCGCCGAAGAAGCCAGACGACGCGGC CTGCAGAGTACGCGCATGGTCAGCTTCCCCAGCGTGTTGTTCCATGGCGATGCCAGCCAGATGGCCAATATCCGCGGCGT CGGCGCCGGCTACCCGCTACGTGGGCAGTTGCTGGTGTCCAAGAACGGCACCGGGACGGAAGGCAGCGTCGCCAGCGCAC CGCCGCCGGGCCAGGCCTATGCCGATCCGCGCCTGCTCGAAGCGCTGGGCCTGCACATAGGCGAGCAACTGGAATTCGGC GCCGGCCATCTGACCATCACCGGCGTGTTGCGCGCCGAACCCGATGCCTCCGGTGAGCTGATGCAACTCTCGCCGCCGCT GCTGGTCAATCGCGCCGATATCGAAGGCGCCGGCCTGCTCGGCCCCGGCAGCCGCGCCTCCTATCGGTTGATGTTCGCCG GCGCACCGGATGCCATCGCCGATTTGCGCGCTTGGTTGAAACCACGCGCCAGCGAGTATCGCCTGGTCGGCATCGAAGAC ACCCAGCGCGGCATGCGTGCAGCGTTTGATCGCGCCGGCCGCTTCCTGGCCTTGTCGGCGTTGCTGGCGGTGCTGTTGTC CGGTGTGGCCACGGCCCTGGCAGCGAACCGGTTTGCGATGCGACGCATCGACACCGTGGCGGTCCTGCGCTGCCTGGGTG CCCGCCAGCGCGACATCCTGGCGATGCTGTCGCTGCAATTGTTGCTGACGGCGATACCGGCCTGCCTGGTCGGTATCGGG CTTGGCATGCTCGCGCAGGAAGGCCTGGTGCAGGCGCTGGGCAGTCTGATCCCGAACCGGTTGCCGCTGCCACAGGCCAC CCCTGCCCTGGCCGGTGCAGGCATCGGCCTGGTGCTGTTGCTGGGCTTCGGCCTGCCGCCGCTGCTGCGGCTGCGCAACG TGCCGCCGATGCGCGTGCTCAACCGCAGCTTTGCTGCAGTGCCGCCCAGCTCGCTGCTGGTGTATGGCGCAGCCCTGGCC GCCACGCTGGCGCTCACCGTCTATGCCACCGGCAATCTGGTGTTGGCCGGTTGGGTGCTGGGCGGCCTGGCCGCGCTGGC ACTGGTGGCGATGTTGCTGGGGCTGGGCCTGCTCGCGTTGCTGCGACCGATCCAGCACCGCCTGCGCGGTGCCTGGAAAC TTGGCCTGGCCTCGCTGACCCGGCGCCGCGGCTTGAGCGTGGTGCAGCTGGTCGGGCTGTCGCTGTCGTTGTGCGCGCTG TTGCTGCTGGCGGTGGTCGGCCCGGGCCTGCTCGGTCAATGGCGCGACCGCCTGCCGGCGGACACGCTCAACTACTTCCT GATGAACATCCAGCCCGAACAAACCCAGCCGGTGCTGCAGACGCTGCGCGGTCTGGGGGTGAACGATGCGGCCGTGGAGC CGTTTTCCACCGGGCGCCTGGTCGCCATCAACGACAAACCGCCGGTGCGCGGCGAGCGTGACCCGGCCGACGATGGCGAC GGCGACAACCGGCCAGTGAATTTTTCCTGGCGCCATGCGTTCCCGCCCGCAAATACGCTGCTGCAGGGCAAGTTCTGGGC GGCCGACAGCACCGCGGCGGAAGCCTCGGTGGAAGAAGGCTGGGCGCAACGCTACCAGCTCAAACTGGGCGATCGCATCA CCTTGCTGCTGGGCGAACAGCAACGCACGTTCACCGTGACCAGCATCCGCAAGGCCGATTGGGATTCGTTCCGGGTCAAC TTCTTCCTGCTGCTCAATCAAGGGTCGGTCGGCGATGCGCCGTACAACCTGATTTCCGCCTTCCACCTGCCGCCGGGCAA TGCGTCCAAGCTGGCGGCGCTGAGCCGCGCCTATCCGAACATTTCGTTGCTGGATATCGACGCAATCCTTGGGCGCGTGC GCGAGGTCATCGACCAGGTGGCACAGGCGGTGCAATTGGTGATGGGCTTCAGCCTGCTGGCCGGCGTGCTGGTGTTGCTG GCCGCGTTGCAGGCCACCGCGGGCGAACGCCGTTACGACAGCGCGGTATTGCGCACCCTGGGCGCACGCCGTGGCCAGCT ACGCGGTGCGGTGCTGGTGGAATTCGGCGCGCTTGGCTTGCTGGCGGCGACGCTGGCAGTGTCCGCTGCGGCCGTGATCG GCGCGGTCGTGGGGAAGCAGGCGTTCGAGATTGCGTTGACGCCGGATTGGCCGCGCCTGCTGCTCGGCGGCGCATTCGGG CTGGCGTTGAGTCTGTTGGCGGGTTGGTCGGGCACCCGGCGCATCTTGTCCACGCCGCCGGCGTTGGCATTGCGGAGCGA GTAA
Upstream 100 bases:
>100_bases CGCTGGTCCTGGTCACGCATGACATGACGCTGGCGCAGCGTTGTCGCCACATCTACCGCATCGACAGCGGCCGCCTGCAC GCACAGACCGGTCCGGCCGC
Downstream 100 bases:
>100_bases GCGCGGGTAACACGCGTCGCATGCGGGCAACGGCGTGCGACACGCGGCCTGGTGGCTGTGCTGCATGCCAGGCGACGGAC GCCGTGGCGCGCCGCGTGAG
Product: oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 827; Mature: 827
Protein sequence:
>827_residues MNVVRQAARAVRREFLAGDLLTVFAALVLGVAVMTAVGTLVDRVTLALTSSAAEVLGGDLGVTGRQEIPADFAEEARRRG LQSTRMVSFPSVLFHGDASQMANIRGVGAGYPLRGQLLVSKNGTGTEGSVASAPPPGQAYADPRLLEALGLHIGEQLEFG AGHLTITGVLRAEPDASGELMQLSPPLLVNRADIEGAGLLGPGSRASYRLMFAGAPDAIADLRAWLKPRASEYRLVGIED TQRGMRAAFDRAGRFLALSALLAVLLSGVATALAANRFAMRRIDTVAVLRCLGARQRDILAMLSLQLLLTAIPACLVGIG LGMLAQEGLVQALGSLIPNRLPLPQATPALAGAGIGLVLLLGFGLPPLLRLRNVPPMRVLNRSFAAVPPSSLLVYGAALA ATLALTVYATGNLVLAGWVLGGLAALALVAMLLGLGLLALLRPIQHRLRGAWKLGLASLTRRRGLSVVQLVGLSLSLCAL LLLAVVGPGLLGQWRDRLPADTLNYFLMNIQPEQTQPVLQTLRGLGVNDAAVEPFSTGRLVAINDKPPVRGERDPADDGD GDNRPVNFSWRHAFPPANTLLQGKFWAADSTAAEASVEEGWAQRYQLKLGDRITLLLGEQQRTFTVTSIRKADWDSFRVN FFLLLNQGSVGDAPYNLISAFHLPPGNASKLAALSRAYPNISLLDIDAILGRVREVIDQVAQAVQLVMGFSLLAGVLVLL AALQATAGERRYDSAVLRTLGARRGQLRGAVLVEFGALGLLAATLAVSAAAVIGAVVGKQAFEIALTPDWPRLLLGGAFG LALSLLAGWSGTRRILSTPPALALRSE
Sequences:
>Translated_827_residues MNVVRQAARAVRREFLAGDLLTVFAALVLGVAVMTAVGTLVDRVTLALTSSAAEVLGGDLGVTGRQEIPADFAEEARRRG LQSTRMVSFPSVLFHGDASQMANIRGVGAGYPLRGQLLVSKNGTGTEGSVASAPPPGQAYADPRLLEALGLHIGEQLEFG AGHLTITGVLRAEPDASGELMQLSPPLLVNRADIEGAGLLGPGSRASYRLMFAGAPDAIADLRAWLKPRASEYRLVGIED TQRGMRAAFDRAGRFLALSALLAVLLSGVATALAANRFAMRRIDTVAVLRCLGARQRDILAMLSLQLLLTAIPACLVGIG LGMLAQEGLVQALGSLIPNRLPLPQATPALAGAGIGLVLLLGFGLPPLLRLRNVPPMRVLNRSFAAVPPSSLLVYGAALA ATLALTVYATGNLVLAGWVLGGLAALALVAMLLGLGLLALLRPIQHRLRGAWKLGLASLTRRRGLSVVQLVGLSLSLCAL LLLAVVGPGLLGQWRDRLPADTLNYFLMNIQPEQTQPVLQTLRGLGVNDAAVEPFSTGRLVAINDKPPVRGERDPADDGD GDNRPVNFSWRHAFPPANTLLQGKFWAADSTAAEASVEEGWAQRYQLKLGDRITLLLGEQQRTFTVTSIRKADWDSFRVN FFLLLNQGSVGDAPYNLISAFHLPPGNASKLAALSRAYPNISLLDIDAILGRVREVIDQVAQAVQLVMGFSLLAGVLVLL AALQATAGERRYDSAVLRTLGARRGQLRGAVLVEFGALGLLAATLAVSAAAVIGAVVGKQAFEIALTPDWPRLLLGGAFG LALSLLAGWSGTRRILSTPPALALRSE >Mature_827_residues MNVVRQAARAVRREFLAGDLLTVFAALVLGVAVMTAVGTLVDRVTLALTSSAAEVLGGDLGVTGRQEIPADFAEEARRRG LQSTRMVSFPSVLFHGDASQMANIRGVGAGYPLRGQLLVSKNGTGTEGSVASAPPPGQAYADPRLLEALGLHIGEQLEFG AGHLTITGVLRAEPDASGELMQLSPPLLVNRADIEGAGLLGPGSRASYRLMFAGAPDAIADLRAWLKPRASEYRLVGIED TQRGMRAAFDRAGRFLALSALLAVLLSGVATALAANRFAMRRIDTVAVLRCLGARQRDILAMLSLQLLLTAIPACLVGIG LGMLAQEGLVQALGSLIPNRLPLPQATPALAGAGIGLVLLLGFGLPPLLRLRNVPPMRVLNRSFAAVPPSSLLVYGAALA ATLALTVYATGNLVLAGWVLGGLAALALVAMLLGLGLLALLRPIQHRLRGAWKLGLASLTRRRGLSVVQLVGLSLSLCAL LLLAVVGPGLLGQWRDRLPADTLNYFLMNIQPEQTQPVLQTLRGLGVNDAAVEPFSTGRLVAINDKPPVRGERDPADDGD GDNRPVNFSWRHAFPPANTLLQGKFWAADSTAAEASVEEGWAQRYQLKLGDRITLLLGEQQRTFTVTSIRKADWDSFRVN FFLLLNQGSVGDAPYNLISAFHLPPGNASKLAALSRAYPNISLLDIDAILGRVREVIDQVAQAVQLVMGFSLLAGVLVLL AALQATAGERRYDSAVLRTLGARRGQLRGAVLVEFGALGLLAATLAVSAAAVIGAVVGKQAFEIALTPDWPRLLLGGAFG LALSLLAGWSGTRRILSTPPALALRSE
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=811, Percent_Identity=33.4155363748459, Blast_Score=363, Evalue=1e-101,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 87126; Mature: 87126
Theoretical pI: Translated: 10.54; Mature: 10.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVVRQAARAVRREFLAGDLLTVFAALVLGVAVMTAVGTLVDRVTLALTSSAAEVLGGDL CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GVTGRQEIPADFAEEARRRGLQSTRMVSFPSVLFHGDASQMANIRGVGAGYPLRGQLLVS CCCCCCCCCHHHHHHHHHCCCCHHHHCCCCHHEEECCHHHHHHCCCCCCCCCCCCEEEEE KNGTGTEGSVASAPPPGQAYADPRLLEALGLHIGEQLEFGAGHLTITGVLRAEPDASGEL CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCE MQLSPPLLVNRADIEGAGLLGPGSRASYRLMFAGAPDAIADLRAWLKPRASEYRLVGIED EECCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCH TQRGMRAAFDRAGRFLALSALLAVLLSGVATALAANRFAMRRIDTVAVLRCLGARQRDIL HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH AMLSLQLLLTAIPACLVGIGLGMLAQEGLVQALGSLIPNRLPLPQATPALAGAGIGLVLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHH LGFGLPPLLRLRNVPPMRVLNRSFAAVPPSSLLVYGAALAATLALTVYATGNLVLAGWVL HHCCCCHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCHHHHHHH GGLAALALVAMLLGLGLLALLRPIQHRLRGAWKLGLASLTRRRGLSVVQLVGLSLSLCAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LLLAVVGPGLLGQWRDRLPADTLNYFLMNIQPEQTQPVLQTLRGLGVNDAAVEPFSTGRL HHHHHHCCCHHHHHHHCCCHHHHHHHHEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCE VAINDKPPVRGERDPADDGDGDNRPVNFSWRHAFPPANTLLQGKFWAADSTAAEASVEEG EEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCEECCCCHHHHHHHHHH WAQRYQLKLGDRITLLLGEQQRTFTVTSIRKADWDSFRVNFFLLLNQGSVGDAPYNLISA HHHHHHHCCCCEEEEEECCCCCEEEEEEHHHCCCCCEEEEEEEEEECCCCCCCCHHHHHE FHLPPGNASKLAALSRAYPNISLLDIDAILGRVREVIDQVAQAVQLVMGFSLLAGVLVLL ECCCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AALQATAGERRYDSAVLRTLGARRGQLRGAVLVEFGALGLLAATLAVSAAAVIGAVVGKQ HHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH AFEIALTPDWPRLLLGGAFGLALSLLAGWSGTRRILSTPPALALRSE HEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCC >Mature Secondary Structure MNVVRQAARAVRREFLAGDLLTVFAALVLGVAVMTAVGTLVDRVTLALTSSAAEVLGGDL CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GVTGRQEIPADFAEEARRRGLQSTRMVSFPSVLFHGDASQMANIRGVGAGYPLRGQLLVS CCCCCCCCCHHHHHHHHHCCCCHHHHCCCCHHEEECCHHHHHHCCCCCCCCCCCCEEEEE KNGTGTEGSVASAPPPGQAYADPRLLEALGLHIGEQLEFGAGHLTITGVLRAEPDASGEL CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCE MQLSPPLLVNRADIEGAGLLGPGSRASYRLMFAGAPDAIADLRAWLKPRASEYRLVGIED EECCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCH TQRGMRAAFDRAGRFLALSALLAVLLSGVATALAANRFAMRRIDTVAVLRCLGARQRDIL HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH AMLSLQLLLTAIPACLVGIGLGMLAQEGLVQALGSLIPNRLPLPQATPALAGAGIGLVLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHH LGFGLPPLLRLRNVPPMRVLNRSFAAVPPSSLLVYGAALAATLALTVYATGNLVLAGWVL HHCCCCHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCHHHHHHH GGLAALALVAMLLGLGLLALLRPIQHRLRGAWKLGLASLTRRRGLSVVQLVGLSLSLCAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LLLAVVGPGLLGQWRDRLPADTLNYFLMNIQPEQTQPVLQTLRGLGVNDAAVEPFSTGRL HHHHHHCCCHHHHHHHCCCHHHHHHHHEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCE VAINDKPPVRGERDPADDGDGDNRPVNFSWRHAFPPANTLLQGKFWAADSTAAEASVEEG EEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCEECCCCHHHHHHHHHH WAQRYQLKLGDRITLLLGEQQRTFTVTSIRKADWDSFRVNFFLLLNQGSVGDAPYNLISA HHHHHHHCCCCEEEEEECCCCCEEEEEEHHHCCCCCEEEEEEEEEECCCCCCCCHHHHHE FHLPPGNASKLAALSRAYPNISLLDIDAILGRVREVIDQVAQAVQLVMGFSLLAGVLVLL ECCCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AALQATAGERRYDSAVLRTLGARRGQLRGAVLVEFGALGLLAATLAVSAAAVIGAVVGKQ HHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH AFEIALTPDWPRLLLGGAFGLALSLLAGWSGTRRILSTPPALALRSE HEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]