| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is dld [H]
Identifier: 21241533
GI number: 21241533
Start: 906905
End: 908290
Strand: Reverse
Name: dld [H]
Synonym: XAC0762
Alternate gene names: 21241533
Gene position: 908290-906905 (Counterclockwise)
Preceding gene: 21241534
Following gene: 21241532
Centisome position: 17.55
GC content: 68.33
Gene sequence:
>1386_bases ATGACCGATGTACTTCCCACCGCACTTGCCGAGTTGTTGGCCGCGCGCCTGGGTACCGATGGATGGTTGACCGGCGACGA TGCGCGCCGCCGCTATGGCGAAGACGATTCGCGCCGCTGGGCATTGCCGGCCGCGGTGGCGTTGCCGCGCGACACCGATG AGGTGGTGGCGATCGTGCAGGCGTGCCGTGCGCACGGCGTGCCGATCGTGGCGCGCGGCGCCGGCACCGGCACCACCGGC GCGGCGGTGCCGTTTTCCGGCGGGGTGGTGGTGTCGATGGCGCGCATGAACCAGATCCTGGCACTACGTCCGCAAGACCG CTGCGCGGTGGTGCAACCGGGCCTGCTCAATGGCGACCTGCAACAGGCGCTGCAGCCGCATGGTTTGTTCTGGCCGCCGG ATCCGTCCAGCGCGGACATCTGCAGCGTCGGCGGCAATCTATCCACCAACGCCGGCGGCCCGCGCGCGGTGAAATACGGC GCCACCCGCGACAACGTGCTCGGCCTGGTGGCGGTGACCGGCACCGGCGAGGTGATCCGCTGCGGCGGCGCGTACACCAA GAATTCCACCGGTTACGACCTCACCCACTTGCTGGTCGGCAGCGAGGGCACCCTGGCGATCATCGTCGAGGCGACCTTGA AGCTGACCCCGCGCGCCATTGCGCAAGCCGGCCTGCGCGCGCTGTACCGCGATGCGTCCAGCGCCGCAGCCGCGGTGTCG CGGCTGATGGCGCAACCGACCACGCCGACCATGCTGGAATTCATGGATGCCAGTGCGATTGCGCTGCTACGCCGCAATGG CAGCGATGTGCCCGACGCTGGCGCCATGCTGTTGATCGAAGCCGACGGCGATCACGACACCTTGCCCTACGCGCTGCAAG CCCTGCACGACGCGGCCGATGGCGAAGGCGTACTGAGCCTGGACGTGGCCGCCGATGGCAGCGCGCGCGACAAGTTGTGG GCCGCACGCCGCGCCCTGTCGCCGGCCTTGCGCACCATCAAGCCGGGCAAGATCAATGAGGACGTGGTGGTGCCGGTGTC GCGCATTCCCGAACTCGTCGCCGGCGTGGAAGCGCTCGCTGCGGAATTCGCACTGCCCATCGTCGCCTTCGGCCATGCCG GCAACGGCAACCTGCACGTCAACATCATGTACGACCCGGCCGATGCCGACGAAAACGCCCGCGCGCATGCCGCCTTGCCA CGACTGTTTACGCTGGTGCTGGCGCTGGAAGGCACGCTCTCCGGCGAGCACGGCATCGGCGTGGCCAAGCGCGATTTCAT GAGCCAGGCCTTCAGCGCAGCAACGCTGGCCACCATGCGCGCAATCAAGGCCGCACTGGATCCGGACGGGATTCTCAACC CGGGCAAGGTATTACCGCCTGCATGA
Upstream 100 bases:
>100_bases GCACGTTGCTCTCCGAGCTGCGCTGGGTCTGGTTGCCGCTCACCGTCGCCGTGCTGGGGTGGAAATGCATCCAGCGCGCG GCACCACAGGATCGCATGTC
Downstream 100 bases:
>100_bases GTAAATGATGAGCACTCTTCGTTGCATAACGTCAACGTCATACCACAGCAACCACTTGATGAAATCAGACTTACATGGAT AGCCTGATCATCCGAATAAG
Product: D-lactate dehydrogenase
Products: pyruvate; NADH; H+
Alternate protein names: NA
Number of amino acids: Translated: 461; Mature: 460
Protein sequence:
>461_residues MTDVLPTALAELLAARLGTDGWLTGDDARRRYGEDDSRRWALPAAVALPRDTDEVVAIVQACRAHGVPIVARGAGTGTTG AAVPFSGGVVVSMARMNQILALRPQDRCAVVQPGLLNGDLQQALQPHGLFWPPDPSSADICSVGGNLSTNAGGPRAVKYG ATRDNVLGLVAVTGTGEVIRCGGAYTKNSTGYDLTHLLVGSEGTLAIIVEATLKLTPRAIAQAGLRALYRDASSAAAAVS RLMAQPTTPTMLEFMDASAIALLRRNGSDVPDAGAMLLIEADGDHDTLPYALQALHDAADGEGVLSLDVAADGSARDKLW AARRALSPALRTIKPGKINEDVVVPVSRIPELVAGVEALAAEFALPIVAFGHAGNGNLHVNIMYDPADADENARAHAALP RLFTLVLALEGTLSGEHGIGVAKRDFMSQAFSAATLATMRAIKAALDPDGILNPGKVLPPA
Sequences:
>Translated_461_residues MTDVLPTALAELLAARLGTDGWLTGDDARRRYGEDDSRRWALPAAVALPRDTDEVVAIVQACRAHGVPIVARGAGTGTTG AAVPFSGGVVVSMARMNQILALRPQDRCAVVQPGLLNGDLQQALQPHGLFWPPDPSSADICSVGGNLSTNAGGPRAVKYG ATRDNVLGLVAVTGTGEVIRCGGAYTKNSTGYDLTHLLVGSEGTLAIIVEATLKLTPRAIAQAGLRALYRDASSAAAAVS RLMAQPTTPTMLEFMDASAIALLRRNGSDVPDAGAMLLIEADGDHDTLPYALQALHDAADGEGVLSLDVAADGSARDKLW AARRALSPALRTIKPGKINEDVVVPVSRIPELVAGVEALAAEFALPIVAFGHAGNGNLHVNIMYDPADADENARAHAALP RLFTLVLALEGTLSGEHGIGVAKRDFMSQAFSAATLATMRAIKAALDPDGILNPGKVLPPA >Mature_460_residues TDVLPTALAELLAARLGTDGWLTGDDARRRYGEDDSRRWALPAAVALPRDTDEVVAIVQACRAHGVPIVARGAGTGTTGA AVPFSGGVVVSMARMNQILALRPQDRCAVVQPGLLNGDLQQALQPHGLFWPPDPSSADICSVGGNLSTNAGGPRAVKYGA TRDNVLGLVAVTGTGEVIRCGGAYTKNSTGYDLTHLLVGSEGTLAIIVEATLKLTPRAIAQAGLRALYRDASSAAAAVSR LMAQPTTPTMLEFMDASAIALLRRNGSDVPDAGAMLLIEADGDHDTLPYALQALHDAADGEGVLSLDVAADGSARDKLWA ARRALSPALRTIKPGKINEDVVVPVSRIPELVAGVEALAAEFALPIVAFGHAGNGNLHVNIMYDPADADENARAHAALPR LFTLVLALEGTLSGEHGIGVAKRDFMSQAFSAATLATMRAIKAALDPDGILNPGKVLPPA
Specific function: Unknown
COG id: COG0277
COG function: function code C; FAD/FMN-containing dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAD-binding PCMH-type domain [H]
Homologues:
Organism=Homo sapiens, GI37595756, Length=457, Percent_Identity=34.1356673960613, Blast_Score=246, Evalue=4e-65, Organism=Homo sapiens, GI37595754, Length=480, Percent_Identity=32.5, Blast_Score=234, Evalue=9e-62, Organism=Homo sapiens, GI119964728, Length=426, Percent_Identity=32.1596244131455, Blast_Score=205, Evalue=7e-53, Organism=Homo sapiens, GI4501993, Length=226, Percent_Identity=29.2035398230088, Blast_Score=91, Evalue=3e-18, Organism=Escherichia coli, GI1789351, Length=423, Percent_Identity=37.3522458628842, Blast_Score=268, Evalue=7e-73, Organism=Escherichia coli, GI1787977, Length=521, Percent_Identity=28.4069097888676, Blast_Score=159, Evalue=4e-40, Organism=Escherichia coli, GI48994907, Length=491, Percent_Identity=23.8289205702648, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI48994914, Length=140, Percent_Identity=34.2857142857143, Blast_Score=75, Evalue=9e-15, Organism=Caenorhabditis elegans, GI71992373, Length=455, Percent_Identity=31.6483516483516, Blast_Score=221, Evalue=7e-58, Organism=Caenorhabditis elegans, GI71992381, Length=455, Percent_Identity=30.989010989011, Blast_Score=207, Evalue=1e-53, Organism=Caenorhabditis elegans, GI71992392, Length=380, Percent_Identity=31.8421052631579, Blast_Score=185, Evalue=5e-47, Organism=Caenorhabditis elegans, GI17534361, Length=454, Percent_Identity=27.7533039647577, Blast_Score=162, Evalue=2e-40, Organism=Caenorhabditis elegans, GI17556096, Length=225, Percent_Identity=26.2222222222222, Blast_Score=91, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6320023, Length=452, Percent_Identity=28.5398230088496, Blast_Score=180, Evalue=4e-46, Organism=Saccharomyces cerevisiae, GI6320027, Length=434, Percent_Identity=29.2626728110599, Blast_Score=179, Evalue=1e-45, Organism=Saccharomyces cerevisiae, GI6320764, Length=436, Percent_Identity=28.8990825688073, Blast_Score=171, Evalue=3e-43, Organism=Drosophila melanogaster, GI18921117, Length=425, Percent_Identity=30.3529411764706, Blast_Score=193, Evalue=2e-49, Organism=Drosophila melanogaster, GI24639277, Length=425, Percent_Identity=30.3529411764706, Blast_Score=193, Evalue=2e-49, Organism=Drosophila melanogaster, GI24639275, Length=425, Percent_Identity=30.3529411764706, Blast_Score=193, Evalue=2e-49, Organism=Drosophila melanogaster, GI24653753, Length=242, Percent_Identity=29.3388429752066, Blast_Score=93, Evalue=3e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016166 - InterPro: IPR016167 - InterPro: IPR016164 - InterPro: IPR016168 - InterPro: IPR004113 - InterPro: IPR004490 - InterPro: IPR006094 - InterPro: IPR016171 [H]
Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]
EC number: 1.1.1.28
Molecular weight: Translated: 47743; Mature: 47612
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDVLPTALAELLAARLGTDGWLTGDDARRRYGEDDSRRWALPAAVALPRDTDEVVAIVQ CCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCEEECCCEEECCCCHHHHHHHHH ACRAHGVPIVARGAGTGTTGAAVPFSGGVVVSMARMNQILALRPQDRCAVVQPGLLNGDL HHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEHHHHCCEEEECCCCCEEEECCCCCCCHH QQALQPHGLFWPPDPSSADICSVGGNLSTNAGGPRAVKYGATRDNVLGLVAVTGTGEVIR HHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCEEE CGGAYTKNSTGYDLTHLLVGSEGTLAIIVEATLKLTPRAIAQAGLRALYRDASSAAAAVS ECCCCCCCCCCCCEEEEEECCCCCEEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHH RLMAQPTTPTMLEFMDASAIALLRRNGSDVPDAGAMLLIEADGDHDTLPYALQALHDAAD HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC GEGVLSLDVAADGSARDKLWAARRALSPALRTIKPGKINEDVVVPVSRIPELVAGVEALA CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHH AEFALPIVAFGHAGNGNLHVNIMYDPADADENARAHAALPRLFTLVLALEGTLSGEHGIG HHHHCEEEEECCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC VAKRDFMSQAFSAATLATMRAIKAALDPDGILNPGKVLPPA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure TDVLPTALAELLAARLGTDGWLTGDDARRRYGEDDSRRWALPAAVALPRDTDEVVAIVQ CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCEEECCCEEECCCCHHHHHHHHH ACRAHGVPIVARGAGTGTTGAAVPFSGGVVVSMARMNQILALRPQDRCAVVQPGLLNGDL HHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEHHHHCCEEEECCCCCEEEECCCCCCCHH QQALQPHGLFWPPDPSSADICSVGGNLSTNAGGPRAVKYGATRDNVLGLVAVTGTGEVIR HHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCEEE CGGAYTKNSTGYDLTHLLVGSEGTLAIIVEATLKLTPRAIAQAGLRALYRDASSAAAAVS ECCCCCCCCCCCCEEEEEECCCCCEEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHH RLMAQPTTPTMLEFMDASAIALLRRNGSDVPDAGAMLLIEADGDHDTLPYALQALHDAAD HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC GEGVLSLDVAADGSARDKLWAARRALSPALRTIKPGKINEDVVVPVSRIPELVAGVEALA CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHH AEFALPIVAFGHAGNGNLHVNIMYDPADADENARAHAALPRLFTLVLALEGTLSGEHGIG HHHHCEEEEECCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC VAKRDFMSQAFSAATLATMRAIKAALDPDGILNPGKVLPPA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: (R)-lactate; NAD+
Specific reaction: (R)-lactate + NAD+ = pyruvate + NADH + H+
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969504; 9384377 [H]