| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is yxxF [H]
Identifier: 21241510
GI number: 21241510
Start: 879637
End: 880548
Strand: Direct
Name: yxxF [H]
Synonym: XAC0739
Alternate gene names: 21241510
Gene position: 879637-880548 (Clockwise)
Preceding gene: 21241509
Following gene: 21241513
Centisome position: 17.0
GC content: 66.12
Gene sequence:
>912_bases GTGAGCGCGGCCGTCGCCGTTGCTACCGGCGCAGCGCGCCGTGCCGTCTGGCAATTGCTGGTGGCCGAAGTGCTGATCGG CTCGGTCGGTGTGTTCGTGCATGAAAGCCGGCAGGATCCAGTCACCGCCGTGTTCTATCGCTGCCTGTTCGGTGCGCTGT TTCTCACCGTGTGCGGTGTGTTCGGCGGCCAGTTGCGGGGTCTGTGGCACGAGCGCGCATTGCTGCGCGATGCGAGCATC AGTGGTGTATTGCTGGTGCTCAACTGGGTGGCATTGTTCGCCGGCATGGCGCGCTCGTCGATCGGCGTGGCGACGATGGT CTATCACGTGTTCCCGTTCGTCATGCTCATCCTGGCGGCGGTATTACAGGGCGAACGTACGCGGCGCGCGGATCTGGGCT GGACGCTGCTGGCATTCGTCGGGGTGGCGTGCTCCGCCGATCCGGCGCGGCTGTGGCAGGCGGCCGATCGCGGCTATCTG CTCGGCATCGCGCTGACCCTGCTGGCAGCCTTGCTGTGCGGCGCATCGCTGCTGATGTCGCGTCGCATCAGCCGCGAGCG CCCGCTGGCGGTCGTGACCGTGCAGTGCTGGGTCGGCACGCTGCTGTTGGCCGGCTTCTCCAGCAGTGCGGCGCTGCATC CAGGGCTGCATTGGGTCTGGCTGGTCGGGTTGGGCGTGATCCACAGCGGCGTGGTGTACGTGCTGTTCTATTCGTCGTAT CGCCATCTGCACGTGGCCACGATCGCCGTGTTGGCGTTTGTGTACCCGTTGGTCACGCTGCTGCTGGATTACCTGCTCTA CGGCCACGCCTTGGTACCGGTGCAGTGGCTGGGGCTGGCGCTGATCGTGGTCGGCACGCTGGCGGTGAATCTGAAATGGC GATGGCCACGCCGCGCAGGGACGACGACATGA
Upstream 100 bases:
>100_bases AAGCTTCGGCGCGTGGCGGCGAGCTTGGCTGCCGGGTCGAGGGGCCGCATGTCTATGTGCGCGGCAGCGCGGTGCAGTAC CTGCATGGGACGATCGCGTT
Downstream 100 bases:
>100_bases CCCCGGCCTGCCACGCAGGGCGCGTGGCGATGCAGCTTCAGCGAACGTCGCGCATTTGCCAGTGCGAGCCAGCCAGTGCC TGCATGCGCTGCTTGAAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 303; Mature: 302
Protein sequence:
>303_residues MSAAVAVATGAARRAVWQLLVAEVLIGSVGVFVHESRQDPVTAVFYRCLFGALFLTVCGVFGGQLRGLWHERALLRDASI SGVLLVLNWVALFAGMARSSIGVATMVYHVFPFVMLILAAVLQGERTRRADLGWTLLAFVGVACSADPARLWQAADRGYL LGIALTLLAALLCGASLLMSRRISRERPLAVVTVQCWVGTLLLAGFSSSAALHPGLHWVWLVGLGVIHSGVVYVLFYSSY RHLHVATIAVLAFVYPLVTLLLDYLLYGHALVPVQWLGLALIVVGTLAVNLKWRWPRRAGTTT
Sequences:
>Translated_303_residues MSAAVAVATGAARRAVWQLLVAEVLIGSVGVFVHESRQDPVTAVFYRCLFGALFLTVCGVFGGQLRGLWHERALLRDASI SGVLLVLNWVALFAGMARSSIGVATMVYHVFPFVMLILAAVLQGERTRRADLGWTLLAFVGVACSADPARLWQAADRGYL LGIALTLLAALLCGASLLMSRRISRERPLAVVTVQCWVGTLLLAGFSSSAALHPGLHWVWLVGLGVIHSGVVYVLFYSSY RHLHVATIAVLAFVYPLVTLLLDYLLYGHALVPVQWLGLALIVVGTLAVNLKWRWPRRAGTTT >Mature_302_residues SAAVAVATGAARRAVWQLLVAEVLIGSVGVFVHESRQDPVTAVFYRCLFGALFLTVCGVFGGQLRGLWHERALLRDASIS GVLLVLNWVALFAGMARSSIGVATMVYHVFPFVMLILAAVLQGERTRRADLGWTLLAFVGVACSADPARLWQAADRGYLL GIALTLLAALLCGASLLMSRRISRERPLAVVTVQCWVGTLLLAGFSSSAALHPGLHWVWLVGLGVIHSGVVYVLFYSSYR HLHVATIAVLAFVYPLVTLLLDYLLYGHALVPVQWLGLALIVVGTLAVNLKWRWPRRAGTTT
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 32814; Mature: 32683
Theoretical pI: Translated: 10.17; Mature: 10.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAAVAVATGAARRAVWQLLVAEVLIGSVGVFVHESRQDPVTAVFYRCLFGALFLTVCGV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHH FGGQLRGLWHERALLRDASISGVLLVLNWVALFAGMARSSIGVATMVYHVFPFVMLILAA HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLQGERTRRADLGWTLLAFVGVACSADPARLWQAADRGYLLGIALTLLAALLCGASLLMS HHCCCCHHHHHCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH RRISRERPLAVVTVQCWVGTLLLAGFSSSAALHPGLHWVWLVGLGVIHSGVVYVLFYSSY HHHCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC RHLHVATIAVLAFVYPLVTLLLDYLLYGHALVPVQWLGLALIVVGTLAVNLKWRWPRRAG CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCC TTT CCC >Mature Secondary Structure SAAVAVATGAARRAVWQLLVAEVLIGSVGVFVHESRQDPVTAVFYRCLFGALFLTVCGV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHH FGGQLRGLWHERALLRDASISGVLLVLNWVALFAGMARSSIGVATMVYHVFPFVMLILAA HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLQGERTRRADLGWTLLAFVGVACSADPARLWQAADRGYLLGIALTLLAALLCGASLLMS HHCCCCHHHHHCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH RRISRERPLAVVTVQCWVGTLLLAGFSSSAALHPGLHWVWLVGLGVIHSGVVYVLFYSSY HHHCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC RHLHVATIAVLAFVYPLVTLLLDYLLYGHALVPVQWLGLALIVVGTLAVNLKWRWPRRAG CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCC TTT CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7704263; 9384377; 8316082 [H]