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The map label for this gene is yddE [C]

Identifier: 21241509

GI number: 21241509

Start: 878849

End: 879640

Strand: Direct

Name: yddE [C]

Synonym: XAC0738

Alternate gene names: 21241509

Gene position: 878849-879640 (Clockwise)

Preceding gene: 21241507

Following gene: 21241510

Centisome position: 16.98

GC content: 67.55

Gene sequence:

>792_bases
ATGCCGCTTTCCGTGTTCGTCATCGATGCGTTCACCACGCTCCGCTTCAAGGGCAATCCGGCTGCGGTGGTGCCGCTGCA
GGCCTGGTTGCCGGATGCGCTGATGCAGGCCATCGCCAGCGAAAACAACCTGTCGGAGACGGCATTCTTCGTACGCGATG
CCGATGGCGTGTTCGCGATCCGCTGGTTCTCGCCGCTGAAGGAGGTCGGCTTCTGCGGTCACGCGACGCTGGCCAGCGCG
TTCGTGATCGCCACCCAGCAACTCGCACCGTTCCCGCTGCGTTTGCGTGCGGCCGCGGTCGGCGAACTGGGTGTGGAACG
GCTTGCCGACGGCAGCTTCGAGATGCGCTTTCCGAACCAGGCGCCGGCCTTGGTGGCAGCGGTACCGCAGGCCCTGCTCG
ATGCCTTGTCGATCGCGCCGCAGGCGGTCTACGCCAATCGGCAGGCGTACATCGCGGTGTACGCGGACGAGCGCCAGGTG
CGCGAGGTGGTGCCGGATCTGACGCGCATGCTGGCATTGGCGCCGCGGGATGTTGCGGTGACCGCGGCCGGCAGCGGCCA
CGATTTCGTATCGCGCTATTTCTGGCCGGCCAATGGCGGCGCCGAAGATCCGGTGACCGGCTCCATCCATGCGGCGTTGG
CGCCGTTGTGGGCGCAGACCCTGGGCAAGGCGCAGCTGACCGCACTGCAAGCTTCGGCGCGTGGCGGCGAGCTTGGCTGC
CGGGTCGAGGGGCCGCATGTCTATGTGCGCGGCAGCGCGGTGCAGTACCTGCATGGGACGATCGCGTTGTGA

Upstream 100 bases:

>100_bases
ATTTGTAGCGTATCTGAATCTGTACTGGTCGGGGGCAGCGCTGCACACTGCTGCTGTGCCGGCCCGCGTGTCGGCGTTCC
CGTTGTGTGCGAGGCCGGTC

Downstream 100 bases:

>100_bases
GCGCGGCCGTCGCCGTTGCTACCGGCGCAGCGCGCCGTGCCGTCTGGCAATTGCTGGTGGCCGAAGTGCTGATCGGCTCG
GTCGGTGTGTTCGTGCATGA

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MPLSVFVIDAFTTLRFKGNPAAVVPLQAWLPDALMQAIASENNLSETAFFVRDADGVFAIRWFSPLKEVGFCGHATLASA
FVIATQQLAPFPLRLRAAAVGELGVERLADGSFEMRFPNQAPALVAAVPQALLDALSIAPQAVYANRQAYIAVYADERQV
REVVPDLTRMLALAPRDVAVTAAGSGHDFVSRYFWPANGGAEDPVTGSIHAALAPLWAQTLGKAQLTALQASARGGELGC
RVEGPHVYVRGSAVQYLHGTIAL

Sequences:

>Translated_263_residues
MPLSVFVIDAFTTLRFKGNPAAVVPLQAWLPDALMQAIASENNLSETAFFVRDADGVFAIRWFSPLKEVGFCGHATLASA
FVIATQQLAPFPLRLRAAAVGELGVERLADGSFEMRFPNQAPALVAAVPQALLDALSIAPQAVYANRQAYIAVYADERQV
REVVPDLTRMLALAPRDVAVTAAGSGHDFVSRYFWPANGGAEDPVTGSIHAALAPLWAQTLGKAQLTALQASARGGELGC
RVEGPHVYVRGSAVQYLHGTIAL
>Mature_262_residues
PLSVFVIDAFTTLRFKGNPAAVVPLQAWLPDALMQAIASENNLSETAFFVRDADGVFAIRWFSPLKEVGFCGHATLASAF
VIATQQLAPFPLRLRAAAVGELGVERLADGSFEMRFPNQAPALVAAVPQALLDALSIAPQAVYANRQAYIAVYADERQVR
EVVPDLTRMLALAPRDVAVTAAGSGHDFVSRYFWPANGGAEDPVTGSIHAALAPLWAQTLGKAQLTALQASARGGELGCR
VEGPHVYVRGSAVQYLHGTIAL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=294, Percent_Identity=35.7142857142857, Blast_Score=135, Evalue=3e-32,
Organism=Homo sapiens, GI74316009, Length=255, Percent_Identity=33.7254901960784, Blast_Score=112, Evalue=3e-25,
Organism=Escherichia coli, GI1787737, Length=228, Percent_Identity=30.7017543859649, Blast_Score=79, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17542160, Length=308, Percent_Identity=30.5194805194805, Blast_Score=125, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17542154, Length=308, Percent_Identity=30.5194805194805, Blast_Score=125, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17542158, Length=308, Percent_Identity=28.8961038961039, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17542152, Length=308, Percent_Identity=28.8961038961039, Blast_Score=105, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 27995; Mature: 27864

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLSVFVIDAFTTLRFKGNPAAVVPLQAWLPDALMQAIASENNLSETAFFVRDADGVFAI
CCEEEEEEEEEEEEEECCCCCEEEEHHHHCHHHHHHHHHCCCCCCCEEEEEECCCCEEEE
RWFSPLKEVGFCGHATLASAFVIATQQLAPFPLRLRAAAVGELGVERLADGSFEMRFPNQ
EEHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
APALVAAVPQALLDALSIAPQAVYANRQAYIAVYADERQVREVVPDLTRMLALAPRDVAV
CCHHHHHHHHHHHHHHHCCCHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEE
TAAGSGHDFVSRYFWPANGGAEDPVTGSIHAALAPLWAQTLGKAQLTALQASARGGELGC
EECCCCCHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCEEE
RVEGPHVYVRGSAVQYLHGTIAL
EEECCEEEEECCEEEEEEEEECC
>Mature Secondary Structure 
PLSVFVIDAFTTLRFKGNPAAVVPLQAWLPDALMQAIASENNLSETAFFVRDADGVFAI
CEEEEEEEEEEEEEECCCCCEEEEHHHHCHHHHHHHHHCCCCCCCEEEEEECCCCEEEE
RWFSPLKEVGFCGHATLASAFVIATQQLAPFPLRLRAAAVGELGVERLADGSFEMRFPNQ
EEHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
APALVAAVPQALLDALSIAPQAVYANRQAYIAVYADERQVREVVPDLTRMLALAPRDVAV
CCHHHHHHHHHHHHHHHCCCHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEE
TAAGSGHDFVSRYFWPANGGAEDPVTGSIHAALAPLWAQTLGKAQLTALQASARGGELGC
EECCCCCHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCEEE
RVEGPHVYVRGSAVQYLHGTIAL
EEECCEEEEECCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]