| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is engXCA [H]
Identifier: 21241383
GI number: 21241383
Start: 724505
End: 725929
Strand: Reverse
Name: engXCA [H]
Synonym: XAC0612
Alternate gene names: 21241383
Gene position: 725929-724505 (Counterclockwise)
Preceding gene: 21241387
Following gene: 21241382
Centisome position: 14.03
GC content: 62.04
Gene sequence:
>1425_bases ATGTCTATTTTCAGGGCTGCAAGTACGCTCGCATTGGCAACGATGTTAGCGCTCACCTCCGCACCGGCTTTCAGCTATTC GGTCAGCAATAACAAGATCGTCGACGACAACGGCAATGTGGTTCAGCTCAAGGGCGTCAACGTGTTCGGCTTCGAGACCG GCAACCATGTCATGCATGGTCTGTGGGCACGCAACTGGAAAGAGATGATCAACCAGATGCAGGGCCTGGGCTTCAACGCG GTGCGCCTGCCATTCTGCCCGGCCACGCTGCGTAGCGGCCAGATGCCCAGCAGCATCGACTACAGCCGTAACGCCGATCT GCAGGGCCTGACCTCGCTGCAGATCCTCGACAAGGTGATCAACGAATTCAACGCACGCGGCATGTATGTGCTGCTGGATC ACCACACGCCCGATTGCGGCGCGATTTCCGAGCTGTGGTACACCAGTTCGTATTCCGAAGCGCAATGGCTGGATGATCTG CGCTTTGTCGCCAATCGTTACAAGAACGTGCCGAGCGTGATCGGCGTGGATCTGAAGAACGAGCCGCACGGCGCCGCGAC CTGGGGCACGGGTAACGCCGCCACCGACTGGAACACGGCCGCCGAGCGCGGTTCTGCCGCTGTGCTTGCGGTGGCGCCGA AATGGATCATCGCGGTGGAAGGCATCACCGACAACCCGGTATGTTCGACCAACGGCGGCATCTTCTGGGGTGGCAACCTG CAGCCGCTGGCCTGCACCCCATTGAACATTCCGGCCAACCGCCTGTTGCTGGCACCGCATGTGTACGGCCCGGACGTGTT CGTGCAGTCGTACTTCAACGACAGCAACTTCCCCAACAACATGCCCGCGATCTGGGACCGCCATTTCGGCCAGTTCGCCG GCAGTCACGCGCTGCTGCTGGGCGAATTCGGCGGCAAATACGGCGAAGGCGATGCGCGCGACAAGGTGTGGCAGGACGCG CTGGTGAAGTACCTGCGCAGCAAGGGCATCAACGAAGGATTCTATTGGTCGTGGAACCCCAATAGCGGCGATACCGGCGG CATCCTGCGCGACGACTGGACCAGCGTACGCGAGGACAAGATGACCTTGTTGCGGACGCTGTGGGGAACGGTGAGCAACA GCACACCGACGCCAACGCCGACCCCCACGCCGACGCCAACCCCAACACCAAGCGCGGGCTTCGGTACCAAGGTCATCCCG GACAGCACCTGGAACGGTGGCTACTGCAACCGCGTGCAGGTCACCAACACCGGCACCGCCAGCGGCAATTGGTCGATCTC GCTGACAGTCACCGGCACCGTCAACAACGCCTGGAACGTCACCTGGTCACAGAGCGGCACCACGCTCCAGGCCAGCGGCG TGGACTACAACCGCACGCTGGCGCCCGGTGCAACTGCCGAGTTCGGCTTCTGCGCAGCAGGTTGA
Upstream 100 bases:
>100_bases CTCTTCTGCGGCAGCGGTCACGCCACACGGCGCAGCCGAAGACCAAGATGCCCCCCTCACCGCGCTCGGGCGTCGAGTTC GGTCATCCAGGGAGACCACC
Downstream 100 bases:
>100_bases TGCAATGCGGCGGGCACCCAGTGCGTGTCCGCCGTCGCATCGATGGACCGATGCGAATGCCTGCTTAGGAGCGCACCCGT GCGCGACGAAGCGTTATCGG
Product: cellulase
Products: NA
Alternate protein names: Cellulase; Endo-1,4-beta-glucanase [H]
Number of amino acids: Translated: 474; Mature: 473
Protein sequence:
>474_residues MSIFRAASTLALATMLALTSAPAFSYSVSNNKIVDDNGNVVQLKGVNVFGFETGNHVMHGLWARNWKEMINQMQGLGFNA VRLPFCPATLRSGQMPSSIDYSRNADLQGLTSLQILDKVINEFNARGMYVLLDHHTPDCGAISELWYTSSYSEAQWLDDL RFVANRYKNVPSVIGVDLKNEPHGAATWGTGNAATDWNTAAERGSAAVLAVAPKWIIAVEGITDNPVCSTNGGIFWGGNL QPLACTPLNIPANRLLLAPHVYGPDVFVQSYFNDSNFPNNMPAIWDRHFGQFAGSHALLLGEFGGKYGEGDARDKVWQDA LVKYLRSKGINEGFYWSWNPNSGDTGGILRDDWTSVREDKMTLLRTLWGTVSNSTPTPTPTPTPTPTPTPSAGFGTKVIP DSTWNGGYCNRVQVTNTGTASGNWSISLTVTGTVNNAWNVTWSQSGTTLQASGVDYNRTLAPGATAEFGFCAAG
Sequences:
>Translated_474_residues MSIFRAASTLALATMLALTSAPAFSYSVSNNKIVDDNGNVVQLKGVNVFGFETGNHVMHGLWARNWKEMINQMQGLGFNA VRLPFCPATLRSGQMPSSIDYSRNADLQGLTSLQILDKVINEFNARGMYVLLDHHTPDCGAISELWYTSSYSEAQWLDDL RFVANRYKNVPSVIGVDLKNEPHGAATWGTGNAATDWNTAAERGSAAVLAVAPKWIIAVEGITDNPVCSTNGGIFWGGNL QPLACTPLNIPANRLLLAPHVYGPDVFVQSYFNDSNFPNNMPAIWDRHFGQFAGSHALLLGEFGGKYGEGDARDKVWQDA LVKYLRSKGINEGFYWSWNPNSGDTGGILRDDWTSVREDKMTLLRTLWGTVSNSTPTPTPTPTPTPTPTPSAGFGTKVIP DSTWNGGYCNRVQVTNTGTASGNWSISLTVTGTVNNAWNVTWSQSGTTLQASGVDYNRTLAPGATAEFGFCAAG >Mature_473_residues SIFRAASTLALATMLALTSAPAFSYSVSNNKIVDDNGNVVQLKGVNVFGFETGNHVMHGLWARNWKEMINQMQGLGFNAV RLPFCPATLRSGQMPSSIDYSRNADLQGLTSLQILDKVINEFNARGMYVLLDHHTPDCGAISELWYTSSYSEAQWLDDLR FVANRYKNVPSVIGVDLKNEPHGAATWGTGNAATDWNTAAERGSAAVLAVAPKWIIAVEGITDNPVCSTNGGIFWGGNLQ PLACTPLNIPANRLLLAPHVYGPDVFVQSYFNDSNFPNNMPAIWDRHFGQFAGSHALLLGEFGGKYGEGDARDKVWQDAL VKYLRSKGINEGFYWSWNPNSGDTGGILRDDWTSVREDKMTLLRTLWGTVSNSTPTPTPTPTPTPTPTPSAGFGTKVIPD STWNGGYCNRVQVTNTGTASGNWSISLTVTGTVNNAWNVTWSQSGTTLQASGVDYNRTLAPGATAEFGFCAAG
Specific function: Unknown
COG id: COG2730
COG function: function code G; Endoglucanase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 CBM2 (carbohydrate binding type-2) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008965 - InterPro: IPR012291 - InterPro: IPR001919 - InterPro: IPR001547 - InterPro: IPR018087 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00553 CBM_2; PF00150 Cellulase [H]
EC number: =3.2.1.4 [H]
Molecular weight: Translated: 51295; Mature: 51164
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: PS00659 GLYCOSYL_HYDROL_F5
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIFRAASTLALATMLALTSAPAFSYSVSNNKIVDDNGNVVQLKGVNVFGFETGNHVMHG CCHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEECCCCCEEEEECCEEEEEECCCHHHHH LWARNWKEMINQMQGLGFNAVRLPFCPATLRSGQMPSSIDYSRNADLQGLTSLQILDKVI HHHHHHHHHHHHHHCCCCCEEECCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH NEFNARGMYVLLDHHTPDCGAISELWYTSSYSEAQWLDDLRFVANRYKNVPSVIGVDLKN HHHCCCCEEEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCC EPHGAATWGTGNAATDWNTAAERGSAAVLAVAPKWIIAVEGITDNPVCSTNGGIFWGGNL CCCCCEECCCCCCCCCCCHHHHCCCEEEEEECCEEEEEEECCCCCCEECCCCCEEECCCC QPLACTPLNIPANRLLLAPHVYGPDVFVQSYFNDSNFPNNMPAIWDRHFGQFAGSHALLL CCEEECCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEE GEFGGKYGEGDARDKVWQDALVKYLRSKGINEGFYWSWNPNSGDTGGILRDDWTSVREDK ECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEECCCHHHHHHHH MTLLRTLWGTVSNSTPTPTPTPTPTPTPTPSAGFGTKVIPDSTWNGGYCNRVQVTNTGTA HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC SGNWSISLTVTGTVNNAWNVTWSQSGTTLQASGVDYNRTLAPGATAEFGFCAAG CCCEEEEEEEEEECCCCEEEEECCCCCEEEECCCCCCCEECCCCCCCCCEEECC >Mature Secondary Structure SIFRAASTLALATMLALTSAPAFSYSVSNNKIVDDNGNVVQLKGVNVFGFETGNHVMHG CHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEECCCCCEEEEECCEEEEEECCCHHHHH LWARNWKEMINQMQGLGFNAVRLPFCPATLRSGQMPSSIDYSRNADLQGLTSLQILDKVI HHHHHHHHHHHHHHCCCCCEEECCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH NEFNARGMYVLLDHHTPDCGAISELWYTSSYSEAQWLDDLRFVANRYKNVPSVIGVDLKN HHHCCCCEEEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCC EPHGAATWGTGNAATDWNTAAERGSAAVLAVAPKWIIAVEGITDNPVCSTNGGIFWGGNL CCCCCEECCCCCCCCCCCHHHHCCCEEEEEECCEEEEEEECCCCCCEECCCCCEEECCCC QPLACTPLNIPANRLLLAPHVYGPDVFVQSYFNDSNFPNNMPAIWDRHFGQFAGSHALLL CCEEECCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEE GEFGGKYGEGDARDKVWQDALVKYLRSKGINEGFYWSWNPNSGDTGGILRDDWTSVREDK ECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEECCCHHHHHHHH MTLLRTLWGTVSNSTPTPTPTPTPTPTPTPSAGFGTKVIPDSTWNGGYCNRVQVTNTGTA HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC SGNWSISLTVTGTVNNAWNVTWSQSGTTLQASGVDYNRTLAPGATAEFGFCAAG CCCEEEEEEEEEECCCCEEEEECCCCCEEEECCCCCCCEECCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2373365; 12024217 [H]