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The map label for this gene is rpe [H]

Identifier: 21241246

GI number: 21241246

Start: 563418

End: 564089

Strand: Direct

Name: rpe [H]

Synonym: XAC0472

Alternate gene names: 21241246

Gene position: 563418-564089 (Clockwise)

Preceding gene: 21241244

Following gene: 21241247

Centisome position: 10.89

GC content: 66.37

Gene sequence:

>672_bases
ATGCAACCGACGGCGATCGCCCCGTCCATCCTGTCCGCCGATTTCGCCCGTCTGGGCGAGGAAGTGAACAACGTCCTCAA
GGCTGGTGCCGACTGGGTGCACTTCGACGTGATGGACAACCACTACGTGCCCAACCTCACCATCGGCCCGATGGTGTGCC
AGGCGCTGCGCAAGCACGGCATCACCGCGCCGATCGACGTGCATCTGATGGTCGAGCCGGTGGACCGCATCGTGCCGGAT
TTCGCCAACGCCGGTGCCACCACCATCAGCTTCCACCCCGAAGCCAGCCGCCACGTGCACCGCACGATCCAGCTGATCAA
GTCGCACGGCTGCCAGGCCGGGCTGGTGCTCAACCCGGCCACGCCGGTGGACATCCTGGACTGGGTGCTGCCCGAGCTGG
ACCTGGTATTGGTGATGTCGGTCAACCCGGGCTTCGGCGGGCAGGCCTTCATCCCGTCTGCGCTGGACAAGCTGCGCGCC
ATCCGCAGCAAGATCGACGCGACGGGCAAGCCGATCCGGCTGGAGATCGATGGCGGCGTCAAGGCCGACAACATCGGTGC
GATTGCCGCCGCTGGCGCGGACACCTTCGTCGCCGGCTCGGCCATTTTCAATGCGCCCGACTATGCGCAGGTGATTGCGC
AGATGCGCGCGGCGGTGGATGCGGTGCGATGA

Upstream 100 bases:

>100_bases
GCCTACCCGTGGCGCGTGCCCCAAGCGCCCGGCGGCATTCGGCTTTCCTCGCCGGGCCACGGTTGCGACAATGGCGCTCC
TGCATTTTTCCGAGCTGCCC

Downstream 100 bases:

>100_bases
GCCGGCCCGCGCCACAGATCCGCAGCGCAACGCCTGCGGATGTGCCGCTGCTGCATGAACTCATCACCGCGCTGGCGGTG
TATGAGCGCGAGCCGGATGC

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MQPTAIAPSILSADFARLGEEVNNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPD
FANAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRA
IRSKIDATGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAVDAVR

Sequences:

>Translated_223_residues
MQPTAIAPSILSADFARLGEEVNNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPD
FANAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRA
IRSKIDATGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAVDAVR
>Mature_223_residues
MQPTAIAPSILSADFARLGEEVNNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPD
FANAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRA
IRSKIDATGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAVDAVR

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=212, Percent_Identity=40.0943396226415, Blast_Score=154, Evalue=7e-38,
Organism=Homo sapiens, GI219879828, Length=212, Percent_Identity=38.6792452830189, Blast_Score=145, Evalue=3e-35,
Organism=Homo sapiens, GI24307923, Length=168, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=4e-18,
Organism=Escherichia coli, GI1789788, Length=222, Percent_Identity=70.7207207207207, Blast_Score=331, Evalue=3e-92,
Organism=Escherichia coli, GI1790523, Length=201, Percent_Identity=37.8109452736318, Blast_Score=150, Evalue=6e-38,
Organism=Escherichia coli, GI1790754, Length=210, Percent_Identity=31.9047619047619, Blast_Score=99, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17552948, Length=220, Percent_Identity=42.2727272727273, Blast_Score=161, Evalue=2e-40,
Organism=Saccharomyces cerevisiae, GI6322341, Length=226, Percent_Identity=41.5929203539823, Blast_Score=176, Evalue=2e-45,
Organism=Drosophila melanogaster, GI24586301, Length=214, Percent_Identity=38.3177570093458, Blast_Score=152, Evalue=2e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23692; Mature: 23692

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPTAIAPSILSADFARLGEEVNNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHG
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
ITAPIDVHLMVEPVDRIVPDFANAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPA
CCCCEEEEEEECCHHHHCCHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEECCC
TPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRSKIDATGKPIRLEIDGGV
CCHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
KADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAVDAVR
CCCCCCEEEECCCCHHEECCHHCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQPTAIAPSILSADFARLGEEVNNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHG
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
ITAPIDVHLMVEPVDRIVPDFANAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPA
CCCCEEEEEEECCHHHHCCHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEECCC
TPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRSKIDATGKPIRLEIDGGV
CCHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
KADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAVDAVR
CCCCCCEEEECCCCHHEECCHHCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]