Click here to switch to the map view.

The map label for this gene is yraR [H]

Identifier: 21241205

GI number: 21241205

Start: 514037

End: 514717

Strand: Direct

Name: yraR [H]

Synonym: XAC0432

Alternate gene names: 21241205

Gene position: 514037-514717 (Clockwise)

Preceding gene: 21241204

Following gene: 21241207

Centisome position: 9.93

GC content: 67.69

Gene sequence:

>681_bases
GTGCGCGGATCGTCTCCGAAGGAGCGCGCTGATGGCGAGGATGGCCTGATGGATGTCCTGTTGGCAGGGGCGACCGGCCT
GGTCGGCAGGCACGTGCTGCAGCAATTGCTGGGCGATACGCGTTGCACCGGCGTGGTCGCGATCACGCGGCGGCCGTTGG
CGCAGATCCACCCCAAGTTGCGCAACCAGGTGATCGACTTCGAACGGCTCGATCACTGGACGGCACCGCGCATGGAAGCG
GCCATCTGTGCGTTGGGCAGCACGATGAAACAGGCCGGCTCGCGCGACGCGTTCTATCGTATCGACCACGATTACCCGCT
CGCCATCGCGCGCGCCGCCTGCGCGCAAGGCACCTCGGTCTTCGTGCTGAACTCCGCGGCCGGCGCCAACGCGCAGTCGC
GCATCTTCTACAACCGCGTCAAGGGCGAGCTGGAACGCGATCTGCGCGAGATCGGCTTCCCCTCGCTCACCTTCGTGCGG
CCCGGCCTGATTGGCGGCGAACGCGAAGAACCTCGCACCGGCGAGCACATCGGCAGTATCGTCCTTGGCGCACTCGGCCC
GCTCCTGCCGCGGCGTTTTCGCATCAATCCGGCCGAACGGATCGCGGCGGCGATGGTGTCTGCTGCGCTGGCACCGGCGC
GGGGTGAGCACAGCGTCGAGGCGGCGGAGTTGGCTGGCTAA

Upstream 100 bases:

>100_bases
GCACGCCACGGCGGCCGCGTGGTGGCCGGTGGCAGCGAATGGAAGGCCCCGGCGCATTCGCTGACGCTGCTGGCCGTGGA
GCGCGACCGCATCGTCAGCA

Downstream 100 bases:

>100_bases
CGCTGTCTCGCTTTTTTGTTGCAAGGACGTCGGATACAGGCGACAAGCCGCCGTGTCGTGGGGCGTGCCTGTGCGCGACG
ACGGGTTGCCGACGGAGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MRGSSPKERADGEDGLMDVLLAGATGLVGRHVLQQLLGDTRCTGVVAITRRPLAQIHPKLRNQVIDFERLDHWTAPRMEA
AICALGSTMKQAGSRDAFYRIDHDYPLAIARAACAQGTSVFVLNSAAGANAQSRIFYNRVKGELERDLREIGFPSLTFVR
PGLIGGEREEPRTGEHIGSIVLGALGPLLPRRFRINPAERIAAAMVSAALAPARGEHSVEAAELAG

Sequences:

>Translated_226_residues
MRGSSPKERADGEDGLMDVLLAGATGLVGRHVLQQLLGDTRCTGVVAITRRPLAQIHPKLRNQVIDFERLDHWTAPRMEA
AICALGSTMKQAGSRDAFYRIDHDYPLAIARAACAQGTSVFVLNSAAGANAQSRIFYNRVKGELERDLREIGFPSLTFVR
PGLIGGEREEPRTGEHIGSIVLGALGPLLPRRFRINPAERIAAAMVSAALAPARGEHSVEAAELAG
>Mature_226_residues
MRGSSPKERADGEDGLMDVLLAGATGLVGRHVLQQLLGDTRCTGVVAITRRPLAQIHPKLRNQVIDFERLDHWTAPRMEA
AICALGSTMKQAGSRDAFYRIDHDYPLAIARAACAQGTSVFVLNSAAGANAQSRIFYNRVKGELERDLREIGFPSLTFVR
PGLIGGEREEPRTGEHIGSIVLGALGPLLPRRFRINPAERIAAAMVSAALAPARGEHSVEAAELAG

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YER004W [H]

Homologues:

Organism=Homo sapiens, GI148728166, Length=172, Percent_Identity=34.3023255813954, Blast_Score=99, Evalue=2e-21,
Organism=Homo sapiens, GI148728172, Length=172, Percent_Identity=34.3023255813954, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI148728168, Length=172, Percent_Identity=34.3023255813954, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI148728164, Length=172, Percent_Identity=34.3023255813954, Blast_Score=99, Evalue=3e-21,
Organism=Escherichia coli, GI87082218, Length=200, Percent_Identity=37, Blast_Score=107, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI71983631, Length=201, Percent_Identity=37.8109452736318, Blast_Score=134, Evalue=3e-32,
Organism=Saccharomyces cerevisiae, GI6320840, Length=185, Percent_Identity=35.6756756756757, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000534 [H]

Pfam domain/function: PF01118 Semialdhyde_dh [H]

EC number: NA

Molecular weight: Translated: 24311; Mature: 24311

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGSSPKERADGEDGLMDVLLAGATGLVGRHVLQQLLGDTRCTGVVAITRRPLAQIHPKL
CCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHCHHH
RNQVIDFERLDHWTAPRMEAAICALGSTMKQAGSRDAFYRIDHDYPLAIARAACAQGTSV
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCEE
FVLNSAAGANAQSRIFYNRVKGELERDLREIGFPSLTFVRPGLIGGEREEPRTGEHIGSI
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHCCCCCCCCCCCCCCCHHHHHHH
VLGALGPLLPRRFRINPAERIAAAMVSAALAPARGEHSVEAAELAG
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCC
>Mature Secondary Structure
MRGSSPKERADGEDGLMDVLLAGATGLVGRHVLQQLLGDTRCTGVVAITRRPLAQIHPKL
CCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHCHHH
RNQVIDFERLDHWTAPRMEAAICALGSTMKQAGSRDAFYRIDHDYPLAIARAACAQGTSV
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCEE
FVLNSAAGANAQSRIFYNRVKGELERDLREIGFPSLTFVRPGLIGGEREEPRTGEHIGSI
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHCCCCCCCCCCCCCCCHHHHHHH
VLGALGPLLPRRFRINPAERIAAAMVSAALAPARGEHSVEAAELAG
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]