| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is pucG [H]
Identifier: 21241074
GI number: 21241074
Start: 356516
End: 357772
Strand: Reverse
Name: pucG [H]
Synonym: XAC0300
Alternate gene names: 21241074
Gene position: 357772-356516 (Counterclockwise)
Preceding gene: 21241075
Following gene: 21241073
Centisome position: 6.91
GC content: 67.7
Gene sequence:
>1257_bases TTGTCACCTGATCTGCGTCAGCTGCATACCTTCGGCGAACTCGATCCCCCGCAGCGCCTGTTGATGGGTCCGGGCCCGGT CAATGCGCATCCGCGCGTGCTGCGCGCGATGGCAGCCGATCTGCTGGGGCAGTTCGACCCGGAAATGACCACCTACATGA ACGAGGTGATGGCGCTCTATCGGCCGTTGTTCGGCACCGAGAACCGCTGGACGTTCCTGGTCGATGGCACCGCGCGCGCC GGTATCGAAGCGGCGCTGGTGTCGCTGGTCAGCCCGGGCGAGCGCGTGCTGGTGCTCAACTTCGGCCGCTTCGGCTTGTT GCTCACCGAAATCCTGGGCCGCCTCGGCGCCGACGTGCACAGTGTGGATGCGCCGTGGGGACAGGTGCTGCCGCTAAGCG CGATTGCCGAGGCGATCGAGCGCGTCGCGCCCCAATTGGTGGCCACCGTACACGGCGACACCTCCACCACCATGGCGCAG CCGCTCGATGGCGTCGGCGCACTATGCCGCGCAGCCGGTGCACTGAGTTATGTGGACGCCACCGCCACCATCGGCGGCAT GCCCATCGCCAGCGATCGCTGGGACGTCGACGTGGTCACCGGCGGCCTGCAGAAATGCCTGGGCGGGCCATCCGGCTCGG CACCGATCACCGTCTCCGAGCGCGCCGCAGAAGCGATCTTCGCGCGCCGACATGTCGAACGCGGCATCGTGCGCGCCGAC ATCGCCAACGGCAGCGGCCCGCGCATCGCATCGAACTATTTCGACCTGGCGATGATCATGGATTACTGGTCGGACAAGCG CCTCAACCACCACACCGAAGCCACCACCATGCTGTACGGCGCCCGCGAATGCGCACGCGTAGCCCTGCAGGAAGGGTTGG ATGCACGCTTCGCGCGCCACGCGGCCGCCGGGCGCGCGGTCAGCGCCGGCATTCGCGCGTTGGGGCTGGAGGTGTTCGGC GACGATGCGCATCGCATGACCAACGTCACCGGCGTGGTGATTCCGCCCGGCATCGACAGCGAGGCGGTACGCCGCCGCAT GCGCGAAGATTTCGAGATCGAGATCGGTACGGCGTTCGGCCCGCTGCAGGGCAGGATCTGGCGCATTGGCGCGATGGGCT ACAACGCCATGAAGCACAAGGTGCTGATCACCCTGGCCGCGCTGGAGGCGGTACTGCGCGCCGAAGGCTATGCCTGCACG CACGGCCTGGCGGTGGAAGCGGCACTGGCCGCCTGGCACGCGGAAGTGCAGGCATGA
Upstream 100 bases:
>100_bases GGCGGGATCAGCCATCATCCGGACGAACATGTCGATCCGGCCGATGTCGAGATCGCGCTGGCAGCCATGCGCCACTTCAT CGACCATCTGGGAGATCCCC
Downstream 100 bases:
>100_bases ACGCTGCGCGCGACCTGGTCGGCTATGGCGCCACGCCGCCTGCGGCGCAATGGCCCGGCAGCGCGCGCATCGCAGTGCAG TTCGTGGTCAATTACGAAGA
Product: serine-pyruvate aminotransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 418; Mature: 417
Protein sequence:
>418_residues MSPDLRQLHTFGELDPPQRLLMGPGPVNAHPRVLRAMAADLLGQFDPEMTTYMNEVMALYRPLFGTENRWTFLVDGTARA GIEAALVSLVSPGERVLVLNFGRFGLLLTEILGRLGADVHSVDAPWGQVLPLSAIAEAIERVAPQLVATVHGDTSTTMAQ PLDGVGALCRAAGALSYVDATATIGGMPIASDRWDVDVVTGGLQKCLGGPSGSAPITVSERAAEAIFARRHVERGIVRAD IANGSGPRIASNYFDLAMIMDYWSDKRLNHHTEATTMLYGARECARVALQEGLDARFARHAAAGRAVSAGIRALGLEVFG DDAHRMTNVTGVVIPPGIDSEAVRRRMREDFEIEIGTAFGPLQGRIWRIGAMGYNAMKHKVLITLAALEAVLRAEGYACT HGLAVEAALAAWHAEVQA
Sequences:
>Translated_418_residues MSPDLRQLHTFGELDPPQRLLMGPGPVNAHPRVLRAMAADLLGQFDPEMTTYMNEVMALYRPLFGTENRWTFLVDGTARA GIEAALVSLVSPGERVLVLNFGRFGLLLTEILGRLGADVHSVDAPWGQVLPLSAIAEAIERVAPQLVATVHGDTSTTMAQ PLDGVGALCRAAGALSYVDATATIGGMPIASDRWDVDVVTGGLQKCLGGPSGSAPITVSERAAEAIFARRHVERGIVRAD IANGSGPRIASNYFDLAMIMDYWSDKRLNHHTEATTMLYGARECARVALQEGLDARFARHAAAGRAVSAGIRALGLEVFG DDAHRMTNVTGVVIPPGIDSEAVRRRMREDFEIEIGTAFGPLQGRIWRIGAMGYNAMKHKVLITLAALEAVLRAEGYACT HGLAVEAALAAWHAEVQA >Mature_417_residues SPDLRQLHTFGELDPPQRLLMGPGPVNAHPRVLRAMAADLLGQFDPEMTTYMNEVMALYRPLFGTENRWTFLVDGTARAG IEAALVSLVSPGERVLVLNFGRFGLLLTEILGRLGADVHSVDAPWGQVLPLSAIAEAIERVAPQLVATVHGDTSTTMAQP LDGVGALCRAAGALSYVDATATIGGMPIASDRWDVDVVTGGLQKCLGGPSGSAPITVSERAAEAIFARRHVERGIVRADI ANGSGPRIASNYFDLAMIMDYWSDKRLNHHTEATTMLYGARECARVALQEGLDARFARHAAAGRAVSAGIRALGLEVFGD DAHRMTNVTGVVIPPGIDSEAVRRRMREDFEIEIGTAFGPLQGRIWRIGAMGYNAMKHKVLITLAALEAVLRAEGYACTH GLAVEAALAAWHAEVQA
Specific function: Could encode ureidoglycolase or L-alanine:glyoxylate aminotransferase, or perhaps both activities [H]
COG id: COG0075
COG function: function code E; Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI4557289, Length=384, Percent_Identity=32.03125, Blast_Score=209, Evalue=4e-54, Organism=Caenorhabditis elegans, GI17536281, Length=369, Percent_Identity=36.0433604336043, Blast_Score=231, Evalue=6e-61, Organism=Saccharomyces cerevisiae, GI6321079, Length=210, Percent_Identity=26.1904761904762, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI17530823, Length=383, Percent_Identity=34.4647519582245, Blast_Score=214, Evalue=9e-56,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000192 - InterPro: IPR020578 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00266 Aminotran_5 [H]
EC number: 2.6.1.-
Molecular weight: Translated: 44747; Mature: 44616
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPDLRQLHTFGELDPPQRLLMGPGPVNAHPRVLRAMAADLLGQFDPEMTTYMNEVMALY CCCCHHHHHHCCCCCCCHHHEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH RPLFGTENRWTFLVDGTARAGIEAALVSLVSPGERVLVLNFGRFGLLLTEILGRLGADVH HHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCC SVDAPWGQVLPLSAIAEAIERVAPQLVATVHGDTSTTMAQPLDGVGALCRAAGALSYVDA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHH TATIGGMPIASDRWDVDVVTGGLQKCLGGPSGSAPITVSERAAEAIFARRHVERGIVRAD HHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCEEEE IANGSGPRIASNYFDLAMIMDYWSDKRLNHHTEATTMLYGARECARVALQEGLDARFARH CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHH AAAGRAVSAGIRALGLEVFGDDAHRMTNVTGVVIPPGIDSEAVRRRMREDFEIEIGTAFG HHCCHHHHHHHHHHHHHEECCCHHHHHCCCEEEECCCCCHHHHHHHHCCCCEEEEECCCC PLQGRIWRIGAMGYNAMKHKVLITLAALEAVLRAEGYACTHGLAVEAALAAWHAEVQA CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCC >Mature Secondary Structure SPDLRQLHTFGELDPPQRLLMGPGPVNAHPRVLRAMAADLLGQFDPEMTTYMNEVMALY CCCHHHHHHCCCCCCCHHHEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH RPLFGTENRWTFLVDGTARAGIEAALVSLVSPGERVLVLNFGRFGLLLTEILGRLGADVH HHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCC SVDAPWGQVLPLSAIAEAIERVAPQLVATVHGDTSTTMAQPLDGVGALCRAAGALSYVDA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHH TATIGGMPIASDRWDVDVVTGGLQKCLGGPSGSAPITVSERAAEAIFARRHVERGIVRAD HHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCEEEE IANGSGPRIASNYFDLAMIMDYWSDKRLNHHTEATTMLYGARECARVALQEGLDARFARH CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHH AAAGRAVSAGIRALGLEVFGDDAHRMTNVTGVVIPPGIDSEAVRRRMREDFEIEIGTAFG HHCCHHHHHHHHHHHHHEECCCHHHHHCCCEEEECCCCCHHHHHHHHCCCCEEEEECCCC PLQGRIWRIGAMGYNAMKHKVLITLAALEAVLRAEGYACTHGLAVEAALAAWHAEVQA CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 11344136 [H]