| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is 21241003
Identifier: 21241003
GI number: 21241003
Start: 277495
End: 278724
Strand: Direct
Name: 21241003
Synonym: XAC0229
Alternate gene names: NA
Gene position: 277495-278724 (Clockwise)
Preceding gene: 21241002
Following gene: 21241006
Centisome position: 5.36
GC content: 68.86
Gene sequence:
>1230_bases ATGCCGATGACCAAGACCAGGCCCCGTGGCACGCGCGCGCTGGAAGCACTGCATTTCAGCGTGGCCGATGTGCAGGACGG GCTGGGGCCGTTCCTCAGCGTGTTCCTGCAATCCAAAGGCTGGTCGGTGGCGGCGATCGGCACGGTGATGAGCGTGGGCG GCATCGCCGGCATGCTCGCCACCACACCGGCCGGCGCGCTGGTCGATGCCACCCGGCGCAAACGCGCCGTGGTGGTGATC GGTTGCCTGGCGATCCTGCTGGCCACCGCCTTGATCTGGCTGCAGCCCACCTCTTCCGGCGTGGTCGCCGCACAGATCGC CTCGGCGTTGGCGGCGGCCGGCATCGGCCCGGCATTGACGGGCATTACCCTGGGGCTGGTGCACGCGCGCGGTTTCGACC ATCAACTGGCGCGCAACCAGGTGGCCAACCATGCCGGCAACGTGCTGGCCGCGGTGCTGGCTGGCTGGTTGGGATGGCGT TATGGCTTTGCCGCAGTGTTCCTGCTGACCGCATTTTTCGGCGCCCTGGCGCTGGTGGCCGTGCTGGCGATTCCGGCTGC GGCCATCGACCACCGCGCAGCACGCGGTCTTGCGAGCAACAACGGTGGCGATGCGCTGAGTGGGTGGCGCGTGCTGCTGA CGTGCCGCCCGTTGGCGCTGCTGGCGGTGACGCTGGGGCTGTTCCATCTGGGCAATGCGGCGATGCTGCCGCTGTACGGC ATGGCGATCGTGGCGGCGCATGCCGGCGACCCGAGTGCGTTGACGGCCACCACCATCGTGGTGGCACAGGCCACGATGGT GGTGGTCGCGCTACTGGCGATGCGCTGGATCCGCGTGCACGGGCACTGGTGGGTGCTGCTGGTGGCGTTCATGGCCCTGC CGTTGCGTGCCTTGGTGGCGGCATCGGTGATCCATGGCTGGGGCGTGTTTCCGGTGCAGATCCTCGATGGGCTCGGCGCC GGCCTGCAAAGCGTGGTGGTGCCGGCGCTGGTCGCACGCTTGTTGCAAGGCACCGGGCGCGTCAATGTCGGCCAGGGCGC GGTGATGACGGTGCAGGGCGTCGGTGCGGCACTGAGTCCGGCGTTCGGTGGCTGGTTGGCGCATGCCTTCGGTTATCGCA TCGCGTTTCTGACCTTGGGTGCGATCGCGCTGCTGGCGGTGGCCTTGTGGGCCGGCTGTCGCGGCATGTTGCAGGCAGGG GCCTCCGTGCAGGCCGAGACAATGCTGTGA
Upstream 100 bases:
>100_bases AACACTAGGAGCCGGACATGCGGCCACCGCGCGCCACTGAGATGCTTGCCCCCTGGTCTGCCACGTGCGCCTTCGTGCGC GCTCGCAGTGGAGCATTGCC
Downstream 100 bases:
>100_bases CCGATGCGCAGTGCGCGCACGAAGGTGGCTACCGATCGCTGGCCGTTGCGGCTTGCGCGGTATCGACCGCACTGCGCCGG CGAGGGTGAGCAAGTGCGAT
Product: MFS transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 409; Mature: 408
Protein sequence:
>409_residues MPMTKTRPRGTRALEALHFSVADVQDGLGPFLSVFLQSKGWSVAAIGTVMSVGGIAGMLATTPAGALVDATRRKRAVVVI GCLAILLATALIWLQPTSSGVVAAQIASALAAAGIGPALTGITLGLVHARGFDHQLARNQVANHAGNVLAAVLAGWLGWR YGFAAVFLLTAFFGALALVAVLAIPAAAIDHRAARGLASNNGGDALSGWRVLLTCRPLALLAVTLGLFHLGNAAMLPLYG MAIVAAHAGDPSALTATTIVVAQATMVVVALLAMRWIRVHGHWWVLLVAFMALPLRALVAASVIHGWGVFPVQILDGLGA GLQSVVVPALVARLLQGTGRVNVGQGAVMTVQGVGAALSPAFGGWLAHAFGYRIAFLTLGAIALLAVALWAGCRGMLQAG ASVQAETML
Sequences:
>Translated_409_residues MPMTKTRPRGTRALEALHFSVADVQDGLGPFLSVFLQSKGWSVAAIGTVMSVGGIAGMLATTPAGALVDATRRKRAVVVI GCLAILLATALIWLQPTSSGVVAAQIASALAAAGIGPALTGITLGLVHARGFDHQLARNQVANHAGNVLAAVLAGWLGWR YGFAAVFLLTAFFGALALVAVLAIPAAAIDHRAARGLASNNGGDALSGWRVLLTCRPLALLAVTLGLFHLGNAAMLPLYG MAIVAAHAGDPSALTATTIVVAQATMVVVALLAMRWIRVHGHWWVLLVAFMALPLRALVAASVIHGWGVFPVQILDGLGA GLQSVVVPALVARLLQGTGRVNVGQGAVMTVQGVGAALSPAFGGWLAHAFGYRIAFLTLGAIALLAVALWAGCRGMLQAG ASVQAETML >Mature_408_residues PMTKTRPRGTRALEALHFSVADVQDGLGPFLSVFLQSKGWSVAAIGTVMSVGGIAGMLATTPAGALVDATRRKRAVVVIG CLAILLATALIWLQPTSSGVVAAQIASALAAAGIGPALTGITLGLVHARGFDHQLARNQVANHAGNVLAAVLAGWLGWRY GFAAVFLLTAFFGALALVAVLAIPAAAIDHRAARGLASNNGGDALSGWRVLLTCRPLALLAVTLGLFHLGNAAMLPLYGM AIVAAHAGDPSALTATTIVVAQATMVVVALLAMRWIRVHGHWWVLLVAFMALPLRALVAASVIHGWGVFPVQILDGLGAG LQSVVVPALVARLLQGTGRVNVGQGAVMTVQGVGAALSPAFGGWLAHAFGYRIAFLTLGAIALLAVALWAGCRGMLQAGA SVQAETML
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 41778; Mature: 41647
Theoretical pI: Translated: 11.80; Mature: 11.80
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMTKTRPRGTRALEALHFSVADVQDGLGPFLSVFLQSKGWSVAAIGTVMSVGGIAGMLA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH TTPAGALVDATRRKRAVVVIGCLAILLATALIWLQPTSSGVVAAQIASALAAAGIGPALT CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHH GITLGLVHARGFDHQLARNQVANHAGNVLAAVLAGWLGWRYGFAAVFLLTAFFGALALVA HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLAIPAAAIDHRAARGLASNNGGDALSGWRVLLTCRPLALLAVTLGLFHLGNAAMLPLYG HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHEEHHHHHHHHHHHHHHHHCCCCHHHHHHH MAIVAAHAGDPSALTATTIVVAQATMVVVALLAMRWIRVHGHWWVLLVAFMALPLRALVA HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH ASVIHGWGVFPVQILDGLGAGLQSVVVPALVARLLQGTGRVNVGQGAVMTVQGVGAALSP HHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEECCCCCEEEEECCCCHHCH AFGGWLAHAFGYRIAFLTLGAIALLAVALWAGCRGMLQAGASVQAETML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCC >Mature Secondary Structure PMTKTRPRGTRALEALHFSVADVQDGLGPFLSVFLQSKGWSVAAIGTVMSVGGIAGMLA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH TTPAGALVDATRRKRAVVVIGCLAILLATALIWLQPTSSGVVAAQIASALAAAGIGPALT CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHH GITLGLVHARGFDHQLARNQVANHAGNVLAAVLAGWLGWRYGFAAVFLLTAFFGALALVA HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLAIPAAAIDHRAARGLASNNGGDALSGWRVLLTCRPLALLAVTLGLFHLGNAAMLPLYG HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHEEHHHHHHHHHHHHHHHHCCCCHHHHHHH MAIVAAHAGDPSALTATTIVVAQATMVVVALLAMRWIRVHGHWWVLLVAFMALPLRALVA HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH ASVIHGWGVFPVQILDGLGAGLQSVVVPALVARLLQGTGRVNVGQGAVMTVQGVGAALSP HHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEECCCCCEEEEECCCCHHCH AFGGWLAHAFGYRIAFLTLGAIALLAVALWAGCRGMLQAGASVQAETML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]