| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is pld1 [H]
Identifier: 21240932
GI number: 21240932
Start: 195646
End: 196695
Strand: Direct
Name: pld1 [H]
Synonym: XAC0158
Alternate gene names: 21240932
Gene position: 195646-196695 (Clockwise)
Preceding gene: 21240931
Following gene: 21240935
Centisome position: 3.78
GC content: 65.81
Gene sequence:
>1050_bases ATGCCCACGCGCGGGAAAACCGATGCGGGCGCATTGCCGACCAATCCGCTCGTCAAGGGCGGACGCTACCGGCCTGGCAG TCGCCTCGGCTTCGGTGGCGTGGCGATCGGTAATGGCTTTGCGCCTGCCACCGACGCACAGAGCGAGCAGACGCTGGCAG CGGTGTGGGAGTCGGGCGTGCGGTATTTCGATACCTCGCCTTGGTACGGGTTGGGCTTGTCGGAGCGACGCACCGGCCAT CATTTGCACAACCATCCGGCCGACGATTACGTGTTGTCGACCAAGGTCGGGCGCTTGCTCACCGCGACCGACACGCCGCC CAAGACGATGTGGCAGCAACCGTCGCCGTTCGACTATCGCTACGACTACAGCGCGTCCGGGGTGCGGCGCTCGATCGAAG ACAGCCTGCAGCGTCTGGGTGTGTCGCAGATCGACATCGCGTATATCCACGATCTCTCGCCAGAGAACGAAAAAGACCTG GGCATGCCGTGGGAGCAGCGGTTCGCCGAGGCGGTGAAGGGCGCGATGCCGGAGCTGACCAAGATGCGCAAGGAGGGCTT GATCAAGGCCTGGGGCTTTGGCGTCAATCGTCCTGAGCCGGCCTTGCGCGCAATCGAAGAAGCCGACCCGGACATCTTCC TGCTCGCCTGCCAGTACTCGCTGCTCGACCATGCGCAGGCCTTGCATGACACCTTCCCGAAGATCGCAAAGCACGGCGCC TCGGTTGTGATCGGTGCACCGCTGTTGGCTGGCTATCTGGCCGGGCGCGAGCGTTATCTCTACGACGGCACCATTCCGCC ATGGGCGCCTGCCAAGCGGCAGAAAGCGCTGGCCATCTGCGACCGGTACGGCGTGGATCTACGCACCGTCGCGCTGCAAT TTGCTGCGGCCCCGCAGGTGGTGTCGGCCGTGATTCCCGGTGCGCGCACGGCCGAGCAGGCACGCGCCAATGCGAGCTCG ATGCGGGTGGCGATTCCGTCGGCGGTGTGGGAGGCGCTCAAGCGCGAAGGCGTGATCGAGGCAGACGCGCCGGTGCCCGC GGCGCGTTGA
Upstream 100 bases:
>100_bases CATGAATACACGTCGCCAATTCCTTTCTGCTGCCGCGGCCGGTACTGCGGCATTGGCCGCTGCGCCGTTGATGGCGCAAT CGTCGGCACCCGGCAGCGTG
Downstream 100 bases:
>100_bases GGGCTGAGCCCGCGCGCAGCGTAGGGTGTTCGCGCTGCATGGCAATCAAAACGTCCCGCGTTGAATGAACGGCGCTTGTT GATACAACAGGCGCTCGCCA
Product: L-fucose dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 349; Mature: 348
Protein sequence:
>349_residues MPTRGKTDAGALPTNPLVKGGRYRPGSRLGFGGVAIGNGFAPATDAQSEQTLAAVWESGVRYFDTSPWYGLGLSERRTGH HLHNHPADDYVLSTKVGRLLTATDTPPKTMWQQPSPFDYRYDYSASGVRRSIEDSLQRLGVSQIDIAYIHDLSPENEKDL GMPWEQRFAEAVKGAMPELTKMRKEGLIKAWGFGVNRPEPALRAIEEADPDIFLLACQYSLLDHAQALHDTFPKIAKHGA SVVIGAPLLAGYLAGRERYLYDGTIPPWAPAKRQKALAICDRYGVDLRTVALQFAAAPQVVSAVIPGARTAEQARANASS MRVAIPSAVWEALKREGVIEADAPVPAAR
Sequences:
>Translated_349_residues MPTRGKTDAGALPTNPLVKGGRYRPGSRLGFGGVAIGNGFAPATDAQSEQTLAAVWESGVRYFDTSPWYGLGLSERRTGH HLHNHPADDYVLSTKVGRLLTATDTPPKTMWQQPSPFDYRYDYSASGVRRSIEDSLQRLGVSQIDIAYIHDLSPENEKDL GMPWEQRFAEAVKGAMPELTKMRKEGLIKAWGFGVNRPEPALRAIEEADPDIFLLACQYSLLDHAQALHDTFPKIAKHGA SVVIGAPLLAGYLAGRERYLYDGTIPPWAPAKRQKALAICDRYGVDLRTVALQFAAAPQVVSAVIPGARTAEQARANASS MRVAIPSAVWEALKREGVIEADAPVPAAR >Mature_348_residues PTRGKTDAGALPTNPLVKGGRYRPGSRLGFGGVAIGNGFAPATDAQSEQTLAAVWESGVRYFDTSPWYGLGLSERRTGHH LHNHPADDYVLSTKVGRLLTATDTPPKTMWQQPSPFDYRYDYSASGVRRSIEDSLQRLGVSQIDIAYIHDLSPENEKDLG MPWEQRFAEAVKGAMPELTKMRKEGLIKAWGFGVNRPEPALRAIEEADPDIFLLACQYSLLDHAQALHDTFPKIAKHGAS VVIGAPLLAGYLAGRERYLYDGTIPPWAPAKRQKALAICDRYGVDLRTVALQFAAAPQVVSAVIPGARTAEQARANASSM RVAIPSAVWEALKREGVIEADAPVPAAR
Specific function: Unknown
COG id: COG0667
COG function: function code C; Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldo/keto reductase family [H]
Homologues:
Organism=Escherichia coli, GI1788070, Length=319, Percent_Identity=24.4514106583072, Blast_Score=83, Evalue=3e-17, Organism=Drosophila melanogaster, GI24646155, Length=327, Percent_Identity=28.4403669724771, Blast_Score=98, Evalue=7e-21, Organism=Drosophila melanogaster, GI24646159, Length=324, Percent_Identity=24.6913580246914, Blast_Score=72, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001395 - InterPro: IPR023210 [H]
Pfam domain/function: PF00248 Aldo_ket_red [H]
EC number: =1.1.1.107 [H]
Molecular weight: Translated: 37982; Mature: 37851
Theoretical pI: Translated: 8.59; Mature: 8.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTRGKTDAGALPTNPLVKGGRYRPGSRLGFGGVAIGNGFAPATDAQSEQTLAAVWESGV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCC RYFDTSPWYGLGLSERRTGHHLHNHPADDYVLSTKVGRLLTATDTPPKTMWQQPSPFDYR EEECCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHCCEEECCCCCCHHHCCCCCCCCEE YDYSASGVRRSIEDSLQRLGVSQIDIAYIHDLSPENEKDLGMPWEQRFAEAVKGAMPELT ECCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHH KMRKEGLIKAWGFGVNRPEPALRAIEEADPDIFLLACQYSLLDHAQALHDTFPKIAKHGA HHHHHCCEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCC SVVIGAPLLAGYLAGRERYLYDGTIPPWAPAKRQKALAICDRYGVDLRTVALQFAAAPQV CEEECHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH VSAVIPGARTAEQARANASSMRVAIPSAVWEALKREGVIEADAPVPAAR HHHHCCCCHHHHHHHCCHHHEEEECHHHHHHHHHHCCCEECCCCCCCCC >Mature Secondary Structure PTRGKTDAGALPTNPLVKGGRYRPGSRLGFGGVAIGNGFAPATDAQSEQTLAAVWESGV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCC RYFDTSPWYGLGLSERRTGHHLHNHPADDYVLSTKVGRLLTATDTPPKTMWQQPSPFDYR EEECCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHCCEEECCCCCCHHHCCCCCCCCEE YDYSASGVRRSIEDSLQRLGVSQIDIAYIHDLSPENEKDLGMPWEQRFAEAVKGAMPELT ECCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHH KMRKEGLIKAWGFGVNRPEPALRAIEEADPDIFLLACQYSLLDHAQALHDTFPKIAKHGA HHHHHCCEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCC SVVIGAPLLAGYLAGRERYLYDGTIPPWAPAKRQKALAICDRYGVDLRTVALQFAAAPQV CEEECHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH VSAVIPGARTAEQARANASSMRVAIPSAVWEALKREGVIEADAPVPAAR HHHHCCCCHHHHHHHCCHHHEEEECHHHHHHHHHHCCCEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA