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The map label for this gene is rpsT

Identifier: 57238624

GI number: 57238624

Start: 1679643

End: 1679906

Strand: Direct

Name: rpsT

Synonym: CJE1783

Alternate gene names: 57238624

Gene position: 1679643-1679906 (Clockwise)

Preceding gene: 57238623

Following gene: 57238625

Centisome position: 94.48

GC content: 33.33

Gene sequence:

>264_bases
ATGGCAAACCATAAATCTGCTGAAAAAAGAGCAAGACAAACTATTAAAAAAACAGAAAGAAATAGATTCTATAGAACAAG
ACTTAAAAATATAACTAAAGCCGTAAGAGAAGCTGCAGCAAATGGAGATAAAAATGCTGCTAATGAAGCTTTAAAAGTAG
CTAATAAAAGCATTCATGCTATGGTAAGTCGCGGTTTCATTAAAAAACAAACTGCTTCTCGCCGTGTAAGCCGCTTAGCC
CTTTTAGTAAATAAAATCGCATAA

Upstream 100 bases:

>100_bases
AAATTTAAAAGACTTATTTTGAAATTTTGCTTAAATTAATTAAATTTTAAATTTTATTCTTATATAATTTAGTCTTTAAT
TTCAAAAAAGGAAAATATAA

Downstream 100 bases:

>100_bases
TTTTCTATATAGTTTTTAATGTTAGCTAGCAAACTAGATCCTTTTTTAAAACGCTTTGAAGAGTTAAATTCTCTTCTTAG
CAGTTCTGATATAATCAACG

Product: 30S ribosomal protein S20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 86

Protein sequence:

>87_residues
MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDKNAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLA
LLVNKIA

Sequences:

>Translated_87_residues
MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDKNAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLA
LLVNKIA
>Mature_86_residues
ANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDKNAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLAL
LVNKIA

Specific function: Binds directly to 16S ribosomal RNA

COG id: COG0268

COG function: function code J; Ribosomal protein S20

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S20P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS20_CAMJ8 (A8FNS2)

Other databases:

- EMBL:   CP000814
- RefSeq:   YP_001483086.1
- ProteinModelPortal:   A8FNS2
- SMR:   A8FNS2
- STRING:   A8FNS2
- GeneID:   5618270
- GenomeReviews:   CP000814_GR
- KEGG:   cju:C8J_1512
- eggNOG:   COG0268
- HOGENOM:   HBG734145
- OMA:   RTQMRGA
- ProtClustDB:   PRK00239
- BioCyc:   CJEJ407148:C8J_1512-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00500
- InterPro:   IPR002583
- Gene3D:   G3DSA:1.20.58.110
- ProDom:   PD004231
- TIGRFAMs:   TIGR00029

Pfam domain/function: PF01649 Ribosomal_S20p; SSF46992 Ribosomal_S20p

EC number: NA

Molecular weight: Translated: 9818; Mature: 9686

Theoretical pI: Translated: 12.32; Mature: 12.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDKNAANEALKVANKSIHA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
MVSRGFIKKQTASRRVSRLALLVNKIA
HHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
ANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDKNAANEALKVANKSIHA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
MVSRGFIKKQTASRRVSRLALLVNKIA
HHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA