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The map label for this gene is ctsD [H]

Identifier: 57238497

GI number: 57238497

Start: 1546459

End: 1547871

Strand: Reverse

Name: ctsD [H]

Synonym: CJE1647

Alternate gene names: 57238497

Gene position: 1547871-1546459 (Counterclockwise)

Preceding gene: 57238498

Following gene: 57238496

Centisome position: 87.07

GC content: 27.81

Gene sequence:

>1413_bases
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAATATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTAGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAACCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGTGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGTGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAACAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTCAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGTGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Upstream 100 bases:

>100_bases
AAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAGATTAAATTCCAATATGATAATTTAGAAAT
TGCAATCCAAATAAATAAAA

Downstream 100 bases:

>100_bases
AATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTTTTTATGGG
GAAAAAGTGGTAGTGGTAAA

Product: general secretory pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRVNLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Sequences:

>Translated_470_residues
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRVNLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE
>Mature_470_residues
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRVNLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=230, Percent_Identity=26.5217391304348, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 53123; Mature: 53123

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEK
CEEHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHCEEEEEHHHHHHHH
LEILQNSVNIHQMSLDEIFNFFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQS
HHHHHCCCCEEEECHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEEEEEHHHHCCCC
ITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIEKEIIVLLKNSHEDYEAKTPI
CEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCE
INPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFN
ECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCCCCCCCEEEEE
IGLNSQVNNENSFIQFQNGQGFVKNLGLRVNLNFDSIINFLSQNGKTSVLSNPKLMALNN
EECCCCCCCCCCEEEEECCCCHHHCCCEEEEECHHHHHHHHHCCCCEEEECCCEEEEECC
QQAIISVGDTINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRIN
CEEEEEECCCEEEEEECCCCCCCCCCEEECCCCCEEEHHHHHHHHHCCCCCCCEEEEEEC
PSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSIN
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEECCCCEEEEEEEECCCCCCCCCHHH
FLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE
HHHHCCHHHHHHCCCCCCCCCCEEEEEEECHHHCCCCCCCHHHCCCCCCC
>Mature Secondary Structure
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEK
CEEHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHCEEEEEHHHHHHHH
LEILQNSVNIHQMSLDEIFNFFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQS
HHHHHCCCCEEEECHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEEEEEHHHHCCCC
ITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIEKEIIVLLKNSHEDYEAKTPI
CEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCE
INPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFN
ECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCCCCCCCEEEEE
IGLNSQVNNENSFIQFQNGQGFVKNLGLRVNLNFDSIINFLSQNGKTSVLSNPKLMALNN
EECCCCCCCCCCEEEEECCCCHHHCCCEEEEECHHHHHHHHHCCCCEEEECCCEEEEECC
QQAIISVGDTINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRIN
CEEEEEECCCEEEEEECCCCCCCCCCEEECCCCCEEEHHHHHHHHHCCCCCCCEEEEEEC
PSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSIN
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEECCCCEEEEEEEECCCCCCCCCHHH
FLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE
HHHHCCHHHHHHCCCCCCCCCCEEEEEEECHHHCCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1313415; 12024217; 10692359 [H]