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The map label for this gene is vacJ [C]

Identifier: 57238415

GI number: 57238415

Start: 1463271

End: 1463969

Strand: Direct

Name: vacJ [C]

Synonym: CJE1563

Alternate gene names: 57238415

Gene position: 1463271-1463969 (Clockwise)

Preceding gene: 57238414

Following gene: 57238416

Centisome position: 82.31

GC content: 34.76

Gene sequence:

>699_bases
TTGAGAATAAAATTTATATCTTTTATTTTAATTTTTTTTGCTGTTTTTGCTTTTGCTAAAGAACAAAATTTAGATGATTT
CGAACAAGAATACCAAAACTATCAAGTAAACGATCCACTTTCAGGATATAACAAAGCTATGACAAGTTTTAATGTGGCTT
TGTATGATTATGGTTTGCGTCCCGTTCTTAAGGGCTATAACACTATCACTCCTGAATTTATAAGATTAGGGGTAAGAAAT
TTCTTTGATAATTTACTTGCTCCTTTGCGTTTTGTAGGCAATATTTTGCAGTTTAAATTTGAAGAAGCGGGAGAAGAATT
TAAAAGATTTACCGCCAATACCATTATGGGCTTTGGTGGACTTATGGATGTGGCATCAAAAATGGGTCTTAAAAAACATC
CCGCGGACTTAGGAACCGTTTTGGCTCACTGGGGTGTAGGAAGCGGTTTTCATATTGTCTTACCTATACTCGGCCCTAGT
AATCTTAGAGATACTCTTGCTTTACCTGCAACTTGGTATGCAAGTTTTACTGCTTACATTGATCCTACTTGGGCAAGTAT
AGCTATAAGTGCTTATGGATTTGGTAATGAACTTAGTTTTAGACTTGATGAAATTGATGAAATTTATCACAACACGCCTA
ATTTATATCCATTCTTGCGTGATGCTTACGAGCAAAGACGCAATGAACTTAGCAAATAA

Upstream 100 bases:

>100_bases
AAGTAAAAGAAGCTACTGAATGGGTGGATTTTTACTGGGATATAAACCTTGATTAAAAATTTGCTATAATTTTACTTTTA
AAATTTTTAGGAGTTTTTGC

Downstream 100 bases:

>100_bases
AGGAAAATAATGAAAAAAATATTTTTAATCTTGGCTTTATTTTTTAATGCTTTTGCCTTGCAGCTAGATGAAATTTCTAG
TACTATGCAAAAAAACATTG

Product: VacJ family lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MRIKFISFILIFFAVFAFAKEQNLDDFEQEYQNYQVNDPLSGYNKAMTSFNVALYDYGLRPVLKGYNTITPEFIRLGVRN
FFDNLLAPLRFVGNILQFKFEEAGEEFKRFTANTIMGFGGLMDVASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPS
NLRDTLALPATWYASFTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPFLRDAYEQRRNELSK

Sequences:

>Translated_232_residues
MRIKFISFILIFFAVFAFAKEQNLDDFEQEYQNYQVNDPLSGYNKAMTSFNVALYDYGLRPVLKGYNTITPEFIRLGVRN
FFDNLLAPLRFVGNILQFKFEEAGEEFKRFTANTIMGFGGLMDVASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPS
NLRDTLALPATWYASFTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPFLRDAYEQRRNELSK
>Mature_232_residues
MRIKFISFILIFFAVFAFAKEQNLDDFEQEYQNYQVNDPLSGYNKAMTSFNVALYDYGLRPVLKGYNTITPEFIRLGVRN
FFDNLLAPLRFVGNILQFKFEEAGEEFKRFTANTIMGFGGLMDVASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPS
NLRDTLALPATWYASFTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPFLRDAYEQRRNELSK

Specific function: Unknown

COG id: COG2853

COG function: function code M; Surface lipoprotein

Gene ontology:

Cell location: Attached To The Outer Membrane By A Lipid Anchor [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaA family [H]

Homologues:

Organism=Escherichia coli, GI1788688, Length=197, Percent_Identity=32.48730964467, Blast_Score=88, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007428 [H]

Pfam domain/function: PF04333 VacJ [H]

EC number: NA

Molecular weight: Translated: 26494; Mature: 26494

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIKFISFILIFFAVFAFAKEQNLDDFEQEYQNYQVNDPLSGYNKAMTSFNVALYDYGLR
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCH
PVLKGYNTITPEFIRLGVRNFFDNLLAPLRFVGNILQFKFEEAGEEFKRFTANTIMGFGG
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMDVASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPSNLRDTLALPATWYASFTAYI
HHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHC
DPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPFLRDAYEQRRNELSK
CCCHHHHEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRIKFISFILIFFAVFAFAKEQNLDDFEQEYQNYQVNDPLSGYNKAMTSFNVALYDYGLR
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCH
PVLKGYNTITPEFIRLGVRNFFDNLLAPLRFVGNILQFKFEEAGEEFKRFTANTIMGFGG
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMDVASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPSNLRDTLALPATWYASFTAYI
HHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHC
DPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPFLRDAYEQRRNELSK
CCCHHHHEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA