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The map label for this gene is ymfN [H]

Identifier: 57238329

GI number: 57238329

Start: 1368368

End: 1369993

Strand: Reverse

Name: ymfN [H]

Synonym: CJE1471

Alternate gene names: 57238329

Gene position: 1369993-1368368 (Counterclockwise)

Preceding gene: 57238330

Following gene: 57238328

Centisome position: 77.06

GC content: 30.5

Gene sequence:

>1626_bases
ATGGATAAATTAAGAGCAAGAGAAGATATATTAAATTACGCTTTAGCTTATATTAAACAAAAAAACAAAGAATTTGAAAA
CTCGCCCTTTTATATTGATGAGAAAATAGCTAAAAAAGCGGTTTTATTTATTTCTCTTTTAAAGCACACCGATGGCGAAT
TAGCCGGTAAGCCCTTTCAGCTTTTAAATTTTCAAATCGAGTTTATCATCGATATCATCGCCACTTATTCTAAGGAAAAA
AACGCCAGAAGATACTCTTACGCTTTGCTTTTTATCCCAAGAAAAAATGGTAAAACAGAGTTAATCGGAGCTATTTTGCT
TTATTTTTTATTTATTGATAAAGAAAAGGGTAAAAAAATATATTGTGCCGCAAATGAAACCGAACAAGCAAAATTAGTTT
TTAATGCTGCTTCATCTATGGTAAGCCAAGAAGAAGAATTAAATAAAATGTGCTATCAATATAAAACCTATAGAGAAATC
CGTAAGAAAAACGCTAAATTTGAAGATTTTATAAAGGTTCTAACAGCTACAAGTGAGACAAAAGACGGCTTAAGACCTTA
TGTTTTTATTTACGATGAGCTTCACGCTGCCAAAAATGGGGATTTATATAAGGTTTTAGAAGAAGGAACGGCAAGTCGTG
TAAATTCTTTATGTATAGTCATTTCAACAGCAGGATATAATCATTTTGGAGAGATGAAAAAGCAATATGATTATTGCAAA
CAAGTTAAAAATGGCATTATAAACGACCCATCAACTTATGCAAAGATTTATGAGCCTGATGCTGATGATGATTGGAACGA
TGAAAAAACTTGGATCAAAGTTAATCCTGCTTTGGGTTATGGCGTAAAGCTTGAAAAATTAAGAGAATATTATCAAAAAG
CTTTAGCAAACGCAAATGATGAGGTGAGTTTTAAAACAAAACATTTAAATATATGGACTTCAAATGCTACTTCTTTTATA
AAAGATGATGATTTTTTAAAATGCAGTTTTAAAGAACTTGATTTAAAAGGCGATGTTTATGTTGGACTTGATCTATCTGC
TACCACTGATTTAACTGCTTTAGCTTTAATTTGCGAAGTGGATAAAATCTTACATGTGGATTTTAAATTTTATGCACCAG
AACTTAGTGCAAGAGAGAGAAGTAAAAGAGATAAAGTGCCTTATTTAGAATGGGCAAAACTTGGCTTTTTAACTCTAACG
CCAGGTAATAGTGTTGATTATGACTATTTAATTAACGATATCTTAGCTCTAAATAAAAAATTAAATATCAAAATGATAGG
TTATGATCCATGGAATAGTTTAGAAGTAGCCAAAAAGTTAAGCGATGAAAATATAGAGTGCGTTCAGATTAGACAAGGTT
TTGCAAGTATTAGCGAACCTTTAAAAGAATACCAAATCAGAGTTTTAAAACAAACTTTAAATCACAATAACAATCCTATT
TTTAGATGGTGTAATTCAAATTTAGTTATTGATCAAGATGCAAGAGAAAACATAAAGCCTGATAAGAAAAAATCAAGTGA
AAGGATAGATGCAATTTCGGCTTTAGTCACTGCAATCGCCACTAAAAACAGCATAGAAAAACCAAAAATCAATGTTTATG
AAAAAAGAGGTATAAGGTTTTTATAG

Upstream 100 bases:

>100_bases
AGTTTTAGGCATAGGCTCTCCAAATCGTGCAAGGCTAAATTTAAAAGATAAAAAAGAAAAATCAGCTTTTGATGTGCTTT
TAGAAGATGAAAGTTAAATT

Downstream 100 bases:

>100_bases
CTTAATAAATTTAGAAGTAAAAATGAGTAAAATTATATTTTTCAAGGAGTTTTTTTGATAAATTGTAATGATAAATTTGA
TAAATGGAATAATGAAAAGA

Product: phage terminase, large subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MDKLRAREDILNYALAYIKQKNKEFENSPFYIDEKIAKKAVLFISLLKHTDGELAGKPFQLLNFQIEFIIDIIATYSKEK
NARRYSYALLFIPRKNGKTELIGAILLYFLFIDKEKGKKIYCAANETEQAKLVFNAASSMVSQEEELNKMCYQYKTYREI
RKKNAKFEDFIKVLTATSETKDGLRPYVFIYDELHAAKNGDLYKVLEEGTASRVNSLCIVISTAGYNHFGEMKKQYDYCK
QVKNGIINDPSTYAKIYEPDADDDWNDEKTWIKVNPALGYGVKLEKLREYYQKALANANDEVSFKTKHLNIWTSNATSFI
KDDDFLKCSFKELDLKGDVYVGLDLSATTDLTALALICEVDKILHVDFKFYAPELSARERSKRDKVPYLEWAKLGFLTLT
PGNSVDYDYLINDILALNKKLNIKMIGYDPWNSLEVAKKLSDENIECVQIRQGFASISEPLKEYQIRVLKQTLNHNNNPI
FRWCNSNLVIDQDARENIKPDKKKSSERIDAISALVTAIATKNSIEKPKINVYEKRGIRFL

Sequences:

>Translated_541_residues
MDKLRAREDILNYALAYIKQKNKEFENSPFYIDEKIAKKAVLFISLLKHTDGELAGKPFQLLNFQIEFIIDIIATYSKEK
NARRYSYALLFIPRKNGKTELIGAILLYFLFIDKEKGKKIYCAANETEQAKLVFNAASSMVSQEEELNKMCYQYKTYREI
RKKNAKFEDFIKVLTATSETKDGLRPYVFIYDELHAAKNGDLYKVLEEGTASRVNSLCIVISTAGYNHFGEMKKQYDYCK
QVKNGIINDPSTYAKIYEPDADDDWNDEKTWIKVNPALGYGVKLEKLREYYQKALANANDEVSFKTKHLNIWTSNATSFI
KDDDFLKCSFKELDLKGDVYVGLDLSATTDLTALALICEVDKILHVDFKFYAPELSARERSKRDKVPYLEWAKLGFLTLT
PGNSVDYDYLINDILALNKKLNIKMIGYDPWNSLEVAKKLSDENIECVQIRQGFASISEPLKEYQIRVLKQTLNHNNNPI
FRWCNSNLVIDQDARENIKPDKKKSSERIDAISALVTAIATKNSIEKPKINVYEKRGIRFL
>Mature_541_residues
MDKLRAREDILNYALAYIKQKNKEFENSPFYIDEKIAKKAVLFISLLKHTDGELAGKPFQLLNFQIEFIIDIIATYSKEK
NARRYSYALLFIPRKNGKTELIGAILLYFLFIDKEKGKKIYCAANETEQAKLVFNAASSMVSQEEELNKMCYQYKTYREI
RKKNAKFEDFIKVLTATSETKDGLRPYVFIYDELHAAKNGDLYKVLEEGTASRVNSLCIVISTAGYNHFGEMKKQYDYCK
QVKNGIINDPSTYAKIYEPDADDDWNDEKTWIKVNPALGYGVKLEKLREYYQKALANANDEVSFKTKHLNIWTSNATSFI
KDDDFLKCSFKELDLKGDVYVGLDLSATTDLTALALICEVDKILHVDFKFYAPELSARERSKRDKVPYLEWAKLGFLTLT
PGNSVDYDYLINDILALNKKLNIKMIGYDPWNSLEVAKKLSDENIECVQIRQGFASISEPLKEYQIRVLKQTLNHNNNPI
FRWCNSNLVIDQDARENIKPDKKKSSERIDAISALVTAIATKNSIEKPKINVYEKRGIRFL

Specific function: Unknown

COG id: COG4626

COG function: function code R; Phage terminase-like protein, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage terminase family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR005021
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]

EC number: NA

Molecular weight: Translated: 62406; Mature: 62406

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLRAREDILNYALAYIKQKNKEFENSPFYIDEKIAKKAVLFISLLKHTDGELAGKPFQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHHHHHHCCCCCCCCCCHH
LLNFQIEFIIDIIATYSKEKNARRYSYALLFIPRKNGKTELIGAILLYFLFIDKEKGKKI
HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEE
YCAANETEQAKLVFNAASSMVSQEEELNKMCYQYKTYREIRKKNAKFEDFIKVLTATSET
EEECCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
KDGLRPYVFIYDELHAAKNGDLYKVLEEGTASRVNSLCIVISTAGYNHFGEMKKQYDYCK
CCCCCCEEEEEEEHHCCCCCCHHHHHHCCCHHHHCCEEEEEEECCCCHHHHHHHHHHHHH
QVKNGIINDPSTYAKIYEPDADDDWNDEKTWIKVNPALGYGVKLEKLREYYQKALANAND
HHHCCCCCCCCCCCEEECCCCCCCCCCCCEEEEECCCCCCCEEHHHHHHHHHHHHCCCCC
EVSFKTKHLNIWTSNATSFIKDDDFLKCSFKELDLKGDVYVGLDLSATTDLTALALICEV
CEEEEEEEEEEEECCCCCCCCCCCCEEEEHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
DKILHVDFKFYAPELSARERSKRDKVPYLEWAKLGFLTLTPGNSVDYDYLINDILALNKK
HHHEEEEEEEECCCHHHHHHHHCCCCCCEEHHHCCEEEECCCCCCCHHHHHHHHHHHCCC
LNIKMIGYDPWNSLEVAKKLSDENIECVQIRQGFASISEPLKEYQIRVLKQTLNHNNNPI
CEEEEEECCCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
FRWCNSNLVIDQDARENIKPDKKKSSERIDAISALVTAIATKNSIEKPKINVYEKRGIRF
EEEECCCEEECCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCC
L
C
>Mature Secondary Structure
MDKLRAREDILNYALAYIKQKNKEFENSPFYIDEKIAKKAVLFISLLKHTDGELAGKPFQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHHHHHHCCCCCCCCCCHH
LLNFQIEFIIDIIATYSKEKNARRYSYALLFIPRKNGKTELIGAILLYFLFIDKEKGKKI
HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEE
YCAANETEQAKLVFNAASSMVSQEEELNKMCYQYKTYREIRKKNAKFEDFIKVLTATSET
EEECCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
KDGLRPYVFIYDELHAAKNGDLYKVLEEGTASRVNSLCIVISTAGYNHFGEMKKQYDYCK
CCCCCCEEEEEEEHHCCCCCCHHHHHHCCCHHHHCCEEEEEEECCCCHHHHHHHHHHHHH
QVKNGIINDPSTYAKIYEPDADDDWNDEKTWIKVNPALGYGVKLEKLREYYQKALANAND
HHHCCCCCCCCCCCEEECCCCCCCCCCCCEEEEECCCCCCCEEHHHHHHHHHHHHCCCCC
EVSFKTKHLNIWTSNATSFIKDDDFLKCSFKELDLKGDVYVGLDLSATTDLTALALICEV
CEEEEEEEEEEEECCCCCCCCCCCCEEEEHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
DKILHVDFKFYAPELSARERSKRDKVPYLEWAKLGFLTLTPGNSVDYDYLINDILALNKK
HHHEEEEEEEECCCHHHHHHHHCCCCCCEEHHHCCEEEECCCCCCCHHHHHHHHHHHCCC
LNIKMIGYDPWNSLEVAKKLSDENIECVQIRQGFASISEPLKEYQIRVLKQTLNHNNNPI
CEEEEEECCCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
FRWCNSNLVIDQDARENIKPDKKKSSERIDAISALVTAIATKNSIEKPKINVYEKRGIRF
EEEECCCEEECCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]