| Definition | Campylobacter jejuni RM1221, complete genome. |
|---|---|
| Accession | NC_003912 |
| Length | 1,777,831 |
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The map label for this gene is icd [H]
Identifier: 57238269
GI number: 57238269
Start: 572518
End: 574722
Strand: Direct
Name: icd [H]
Synonym: CJE0635
Alternate gene names: 57238269
Gene position: 572518-574722 (Clockwise)
Preceding gene: 57238270
Following gene: 57238268
Centisome position: 32.2
GC content: 32.38
Gene sequence:
>2205_bases ATGCAAATTACTTATACCTTAACAGATGAGTCTCCAGCTCTTGCGACTTATTCATTTTTGCCTATAGTGAAAGCTTTTTT AAGTAGGGCACATATAGGAGTAAAAACCTCGGATATTTCTTTGTCTGGAAGGATTTTAGCTACTTTTAGTGAGTATTTAA AAGAGGAACAAAGATGTGAAGATGCTTTAGAACTTTTAGGTGAGCTTGTCAAAAGATCGGATGCAAATCTTATTAAAACC CCAAATATTTCAGCTTCTATTCCTCAGCTTAAGGCGGCGATTAAAGAATTGCAAGATAAGGGTTACATGTTACCAAATTA CCCAGATGAGCCAAAAAATGATGAAGAATTGCAAATTAAAACAAAATATCAAAAAGTTTTAGGTTCAGCGGTTAATCCTG TATTAAGACAAGGAAATTCAGATCGTCGTTCAACAAAAGCGGTAAAAGATTATGCAAAAAACAATCCTTATCGTGTGGTT GAGTTTAATCCAAACTCAAAAACTCGTGTTTCTTACATGAAAGAAGGGGATTTTTTCTCTAATGAAAAAGCGGTTTTAAT CGATCAAGATTGTGTGGCTAATATAGAATTTACAAGCGTTGATGGTAAAAAAGAAATTTTAAAAGAGGGCTTAAAACTTG AAAAAAATGAAATTTTAGACGCTACTTTTATGGATGTGCAAAAACTTCAGGAATTTTATGCAAAAGAAATTAAAGCAAGC AAAGATGATGATGTGCTTTTTTCTTTGCATTTAAAAGCTACAATGATGAAAGTAAGTGATCCTATACTTTTTGGTTATGC GGTAAAAGTATTTTTTAAAGAATTATTTATCGAATTTCAAGATGAATTTGAAAAATTAGGCATTAATCCAAATAATGGTT TAAGTGAGCTTTTAAGTAAGATCGAAAATTCAAGCAAAAAAGATGAAATTTTAAAAAAATACAATGAAATTTTAGCTAAA TCTGCAGATATTTCTATGGTAAATTCAGATAAAGGCATTACAAATCTTCATGTTCCAAGCGATGTTATCGTTGATGCTTC TATGCCTGCAATGCTTAAAAATGGCGCAAGATTGTGGGATAAGGAAGGTAAGGAAAAGGACACAAATGCTGTAATTCCTG ATCAAACTTACGCAACTATTTATGAGGCAGTTATTGAAGATTTGCATAAAAATGGTACTTTAAATCCTTCAAAACTTGGC AGTGTATCTAATGTAGGTTTAATGGCTAAAAAAGCTCAAGAATATGGATCGCACGATAAAACCTTTGTGGCTAAAGAAGA AGGAACTTTTAAAATAGTTTCTAACGGTAAAGTTTTATTAGAACATAAGGTTAGAAAAGGTGATATTTATAGAGCTAATC AGGCTAAATTTGATGCAGTGTTAAATTGGATTGATTTAGGTATAGAAAGATCAGAACTTAGTGGAGCCGAAGCTATTTTT TGGTTAGATAGCAAAAGAGCTAGTAATAAAATCATGATAACTTTGGTACAAAATCGTTTAAAAGAAAAGGGTAAAAATGT AGCCATTTTAACTCCAAAAGAAGCTTGTTTAAGAAGTTTAGAGTTAATCCGAGAAGGTAAAGATGTTATTTCTATCACGG GTAATGTTTTAAGGGATTATTTAACCGATCTTTTTCCTATTTTAGAGCTTGGAACAAGTGCAAAAATGCTTTCTGTTGTG CCTATGTTAAATGGTGGAGCTATGTTTGAAACAGGAGCAGGGGGTTCAGCACCTAAACAAGTAGAACAATTAGTCGAAGA AAATCATCTGCGTTGGGATAGTTTGGGTGAATTTTTGGCTTTGCAAGCAAGTTTGGAATTTTATGCAAATAAGTGTGGCA ATCATAAAGCTAAGGTTTTAGCAGAATGTCTTGATGAGGCTATAGGCGAATGGCTTGAAAATAATAAAGCTCCATCAAGA AAAGTCAAAGAAGATGATAATAGAACAAGTCATTTTTATTTAGCAATGTATTTTGCAAATCATTTAGCAAGACAGGCAAG TGATATGGAGCTTCAAAGCTTTTTTAAAGATATTGCCCTAGAGCTTTCTTCTAATGAAGAAAAAATCAGAGCCGAATTTA ACGATGCACAAGGTGTGAAAGTGGATTTGGGTGGGTATTATAAATTTGATGATGAAAAAGCAAATAAAATTATGCGTCCA AGTGCAACTTTTAACGCTATTTTAGAAAAAATAGGACAAAGATGA
Upstream 100 bases:
>100_bases TTTGAAAACTAAAACAAACTTTAAACTTACTCTTGCATTTTTTTTTATTTGTAATATACTTAAAAATGAAAATAAAAATA AGTATTTTAAAGGACTAAAA
Downstream 100 bases:
>100_bases AAATCACTGTTATAGGGGCTGGCAATGTAGGTTCAAGCGTAGCTTATGCTTTGATTTTAAGAGAAATAGCAAATGAAATT GTTTTAGTAGATATTAACGA
Product: isocitrate dehydrogenase, NADP-dependent
Products: NA
Alternate protein names: IDH-II; IDP-2; NADP+-specific ICDH 2; Oxalosuccinate decarboxylase 2 [H]
Number of amino acids: Translated: 734; Mature: 734
Protein sequence:
>734_residues MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGRILATFSEYLKEEQRCEDALELLGELVKRSDANLIKT PNISASIPQLKAAIKELQDKGYMLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEILDATFMDVQKLQEFYAKEIKAS KDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELFIEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYNEILAK SADISMVNSDKGITNLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNGTLNPSKLG SVSNVGLMAKKAQEYGSHDKTFVAKEEGTFKIVSNGKVLLEHKVRKGDIYRANQAKFDAVLNWIDLGIERSELSGAEAIF WLDSKRASNKIMITLVQNRLKEKGKNVAILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVV PMLNGGAMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCGNHKAKVLAECLDEAIGEWLENNKAPSR KVKEDDNRTSHFYLAMYFANHLARQASDMELQSFFKDIALELSSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRP SATFNAILEKIGQR
Sequences:
>Translated_734_residues MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGRILATFSEYLKEEQRCEDALELLGELVKRSDANLIKT PNISASIPQLKAAIKELQDKGYMLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEILDATFMDVQKLQEFYAKEIKAS KDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELFIEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYNEILAK SADISMVNSDKGITNLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNGTLNPSKLG SVSNVGLMAKKAQEYGSHDKTFVAKEEGTFKIVSNGKVLLEHKVRKGDIYRANQAKFDAVLNWIDLGIERSELSGAEAIF WLDSKRASNKIMITLVQNRLKEKGKNVAILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVV PMLNGGAMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCGNHKAKVLAECLDEAIGEWLENNKAPSR KVKEDDNRTSHFYLAMYFANHLARQASDMELQSFFKDIALELSSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRP SATFNAILEKIGQR >Mature_734_residues MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGRILATFSEYLKEEQRCEDALELLGELVKRSDANLIKT PNISASIPQLKAAIKELQDKGYMLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEILDATFMDVQKLQEFYAKEIKAS KDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELFIEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYNEILAK SADISMVNSDKGITNLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNGTLNPSKLG SVSNVGLMAKKAQEYGSHDKTFVAKEEGTFKIVSNGKVLLEHKVRKGDIYRANQAKFDAVLNWIDLGIERSELSGAEAIF WLDSKRASNKIMITLVQNRLKEKGKNVAILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVV PMLNGGAMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCGNHKAKVLAECLDEAIGEWLENNKAPSR KVKEDDNRTSHFYLAMYFANHLARQASDMELQSFFKDIALELSSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRP SATFNAILEKIGQR
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 82359; Mature: 82359
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGRILATFSEYLKEEQRCE CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHH DALELLGELVKRSDANLIKTPNISASIPQLKAAIKELQDKGYMLPNYPDEPKNDEELQIK HHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHH TKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVVEFNPNSKTRVSYMKEGDFFS HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCC NEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEILDATFMDVQKLQEFYAKEIKAS CCCEEEEECCCCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC KDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELFIEFQDEFEKLGINPNNGLSELLSK CCCCEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH IENSSKKDEILKKYNEILAKSADISMVNSDKGITNLHVPSDVIVDASMPAMLKNGARLWD HHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCEEECCCCHHHHHCCCHHHC KEGKEKDTNAVIPDQTYATIYEAVIEDLHKNGTLNPSKLGSVSNVGLMAKKAQEYGSHDK CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHCCCCC TFVAKEEGTFKIVSNGKVLLEHKVRKGDIYRANQAKFDAVLNWIDLGIERSELSGAEAIF EEEEECCCCEEEEECCEEEEEECCCCCCCEECCHHHHHHHHHHHHCCCCHHHCCCCCEEE WLDSKRASNKIMITLVQNRLKEKGKNVAILTPKEACLRSLELIREGKDVISITGNVLRDY EECCCCCCCCEEEHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCHHEEHHHHHHHHH LTDLFPILELGTSAKMLSVVPMLNGGAMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLA HHHHHHHHHCCCCHHHHHHHEECCCCCEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHH LQASLEFYANKCGNHKAKVLAECLDEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFAN HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH HLARQASDMELQSFFKDIALELSSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRP HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEECCCEEEECCHHHHHHCCC SATFNAILEKIGQR CHHHHHHHHHHCCC >Mature Secondary Structure MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGRILATFSEYLKEEQRCE CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHH DALELLGELVKRSDANLIKTPNISASIPQLKAAIKELQDKGYMLPNYPDEPKNDEELQIK HHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHH TKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVVEFNPNSKTRVSYMKEGDFFS HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCC NEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEILDATFMDVQKLQEFYAKEIKAS CCCEEEEECCCCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC KDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELFIEFQDEFEKLGINPNNGLSELLSK CCCCEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH IENSSKKDEILKKYNEILAKSADISMVNSDKGITNLHVPSDVIVDASMPAMLKNGARLWD HHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCEEECCCCHHHHHCCCHHHC KEGKEKDTNAVIPDQTYATIYEAVIEDLHKNGTLNPSKLGSVSNVGLMAKKAQEYGSHDK CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHCCCCC TFVAKEEGTFKIVSNGKVLLEHKVRKGDIYRANQAKFDAVLNWIDLGIERSELSGAEAIF EEEEECCCCEEEEECCEEEEEECCCCCCCEECCHHHHHHHHHHHHCCCCHHHCCCCCEEE WLDSKRASNKIMITLVQNRLKEKGKNVAILTPKEACLRSLELIREGKDVISITGNVLRDY EECCCCCCCCEEEHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCHHEEHHHHHHHHH LTDLFPILELGTSAKMLSVVPMLNGGAMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLA HHHHHHHHHCCCCHHHHHHHEECCCCCEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHH LQASLEFYANKCGNHKAKVLAECLDEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFAN HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH HLARQASDMELQSFFKDIALELSSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRP HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEECCCEEEECCHHHHHHCCC SATFNAILEKIGQR CHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226630; 1295895 [H]