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The map label for this gene is yohD [H]

Identifier: 57238082

GI number: 57238082

Start: 1259842

End: 1260399

Strand: Direct

Name: yohD [H]

Synonym: CJE1344

Alternate gene names: 57238082

Gene position: 1259842-1260399 (Clockwise)

Preceding gene: 57238081

Following gene: 57238722

Centisome position: 70.86

GC content: 27.96

Gene sequence:

>558_bases
ATGCAAGATATGATTGATACTTTAATAAAATATGGTTATATTGTTTTATTCTTTTACTCTTTAGGGGGCGGGATGGTTGG
AATTTTAGCTGCAGGAGTTTTAAGTTCTCAAGGAAAAATGGATCTTAGTTTTTGCATTGCTCTTGCTTTTATTGCTAATA
CCATAGGTTCAACTTTGCTTTTTATACTTGGAAAATATTATAAAAAAGACATTATGCCTTATTTTAAAAAACACCGACGC
AAGATAGCCCTTGCTATGATAAAAACAAAACAACATGGAATTATTTTACTTGTAACTCAAAAATTTATTTATGGTTTAAA
AACTTTCATTCCCATAGCTGCAGGTATGGCAAAATATAATTTTATTAAATTTTTTATTATCAATACTCTAGCTAGTTTGG
CATGGGCTATTGTTCTAGGTTTTACTGCTTATACTTTTGGGTATGTTATTGAAGCAATTTTTGATAAACTGAGTTTATAT
CCTTATGCTGCTCCTTTATTTTTATTATTTTTAGCCGGAATAATTTGGCTTTATTTAAGTAAATTTTCTAAAAAATAA

Upstream 100 bases:

>100_bases
TAGCAGCTGAAATTCAAGAAAAAATGCAATATCCTGGTGAAATTAAAGTCAATGTTATACGTGAACTTAGAGCTGTAGAA
TACGCTAAATAAGGTTTATT

Downstream 100 bases:

>100_bases
TGTCTCTATGGAATTCTTTTTCTTACTCTTTTAAAGAATTTCATTATTTATTTTTCTCTGTTGTTGTTATTTTTATTTTT
AATATCCTTTTAGAATATAA

Product: DedA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSFCIALAFIANTIGSTLLFILGKYYKKDIMPYFKKHRR
KIALAMIKTKQHGIILLVTQKFIYGLKTFIPIAAGMAKYNFIKFFIINTLASLAWAIVLGFTAYTFGYVIEAIFDKLSLY
PYAAPLFLLFLAGIIWLYLSKFSKK

Sequences:

>Translated_185_residues
MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSFCIALAFIANTIGSTLLFILGKYYKKDIMPYFKKHRR
KIALAMIKTKQHGIILLVTQKFIYGLKTFIPIAAGMAKYNFIKFFIINTLASLAWAIVLGFTAYTFGYVIEAIFDKLSLY
PYAAPLFLLFLAGIIWLYLSKFSKK
>Mature_185_residues
MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSFCIALAFIANTIGSTLLFILGKYYKKDIMPYFKKHRR
KIALAMIKTKQHGIILLVTQKFIYGLKTFIPIAAGMAKYNFIKFFIINTLASLAWAIVLGFTAYTFGYVIEAIFDKLSLY
PYAAPLFLLFLAGIIWLYLSKFSKK

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=157, Percent_Identity=26.7515923566879, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 20846; Mature: 20846

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSFCIALAFIANTIGSTLL
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
FILGKYYKKDIMPYFKKHRRKIALAMIKTKQHGIILLVTQKFIYGLKTFIPIAAGMAKYN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
FIKFFIINTLASLAWAIVLGFTAYTFGYVIEAIFDKLSLYPYAAPLFLLFLAGIIWLYLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
KFSKK
HHCCC
>Mature Secondary Structure
MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSFCIALAFIANTIGSTLL
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
FILGKYYKKDIMPYFKKHRRKIALAMIKTKQHGIILLVTQKFIYGLKTFIPIAAGMAKYN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
FIKFFIINTLASLAWAIVLGFTAYTFGYVIEAIFDKLSLYPYAAPLFLLFLAGIIWLYLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
KFSKK
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]