Click here to switch to the map view.

The map label for this gene is ycaJ [C]

Identifier: 57237203

GI number: 57237203

Start: 191715

End: 192896

Strand: Reverse

Name: ycaJ [C]

Synonym: CJE0191

Alternate gene names: 57237203

Gene position: 192896-191715 (Counterclockwise)

Preceding gene: 57237204

Following gene: 57237202

Centisome position: 10.85

GC content: 30.88

Gene sequence:

>1182_bases
ATGAGCCTAGCTTTGACCTTTCGCCCTGAAAATTTTGATGATATTTTAGGACAATATGAGCTTATAGAAATTTTCAAAAA
ATTTACTGCTTTACAAAAACTTCCTCATAGTATTTTTTTTGGAACGGCAGGTTCTGGAAAAACAACTTTTGCTAGAGTTG
TAGCCAAAGAATTTGGCTTAGATTTTTATGAATTTGATGGAGGAAATTTTAAACTCGAAGAACTAAGAAAAATTTTAGAT
AATTATAAAAATAGTCTTTATAAGCCTTTAATTTTTATTGATGAAATTCACCGCCTTAGCAAAACCCAACAAGAAATGCT
TTTAATTCCTATGGAAAATTACCGTTTAATTTTAATCGGCGCAAGCACTGAAAATCCCTATTTTGTTTTAAGTTCTGGTA
TAAGAAGTCGTTCCATGCTTTTTGAATTTAAATCTTTAGGGGTAAAGGAACTTGAAACTTTACTCTTGCGTGTACAAGAA
AAAATGAAATTTAGTATTGATAAAGAAGCTAAAGATTTTCTACTGAAAAGTGCTGATGCAAGAGCTATGCTAAATTTGCT
TGAATTTGTCTTGGTTTTAGATGAAAAACATATCAGTCTTGAAAATCTTAAAAAACTTCGCAACACCATAAATAGTGAAG
GTGTTAGCTCAAAAGATACACATTATATTTTAGCAAGTGCAATGATAAAAAGTTTACGCGGAAGTGACGTTGATGCAGCT
ATTTATTATCTTGCAAGACTTATTGATGCAGGAGAAAGTGCGGATTTTATCGCTAGGCGTTTGGTGATTTTTTCAAGTGA
AGATATCGGAAATGCCGATCCAAATGCTTTAAATTTAGCGGTTTCGACTCTAGAGGCTGTTAAAAATATAGGTTATCCTG
AAGCAAGAATTATCCTAGCCCAATGCGTAGTTTATTTAGCAAGCACAATCAAATCTAATGCAAGCTACAAAGCTATCAAT
GAAGCTTTAAACTATGTAAAAAATAATGAAGCTTTAGAAATACCTAATTATCTTAACAACAATCATCAAGAAAAACAAAA
CTATCTTTATCCACATGATTTTGGTGGCTGGGTAGAGCAAAAATATCTTAGTAAAAATTTAAAATTTTATCATAGCAAGG
GCTTAGGAGAAGAAGCAAAATTGTTAGATAATTTATATAAATTAAAAAACCATAAAGCTTAA

Upstream 100 bases:

>100_bases
AAGAAAATAATAACTTTTTTCTAAATTTATCTTATGATAGCTTAGCCAATCCTCAACTAAAAATTAATGGTAGTGAATTT
TCAAATATGGATTTAAATTA

Downstream 100 bases:

>100_bases
TTTTATTATTTAAAATTTACAAAATAAATGCTAAAATCAATATTTTATTTTCAAGGAAAAAGATGATTAAAATAGGAATT
TATGGCGCTAAAGGACGAAT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAGSGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKILD
NYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQE
KMKFSIDKEAKDFLLKSADARAMLNLLEFVLVLDEKHISLENLKKLRNTINSEGVSSKDTHYILASAMIKSLRGSDVDAA
IYYLARLIDAGESADFIARRLVIFSSEDIGNADPNALNLAVSTLEAVKNIGYPEARIILAQCVVYLASTIKSNASYKAIN
EALNYVKNNEALEIPNYLNNNHQEKQNYLYPHDFGGWVEQKYLSKNLKFYHSKGLGEEAKLLDNLYKLKNHKA

Sequences:

>Translated_393_residues
MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAGSGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKILD
NYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQE
KMKFSIDKEAKDFLLKSADARAMLNLLEFVLVLDEKHISLENLKKLRNTINSEGVSSKDTHYILASAMIKSLRGSDVDAA
IYYLARLIDAGESADFIARRLVIFSSEDIGNADPNALNLAVSTLEAVKNIGYPEARIILAQCVVYLASTIKSNASYKAIN
EALNYVKNNEALEIPNYLNNNHQEKQNYLYPHDFGGWVEQKYLSKNLKFYHSKGLGEEAKLLDNLYKLKNHKA
>Mature_392_residues
SLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAGSGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKILDN
YKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQEK
MKFSIDKEAKDFLLKSADARAMLNLLEFVLVLDEKHISLENLKKLRNTINSEGVSSKDTHYILASAMIKSLRGSDVDAAI
YYLARLIDAGESADFIARRLVIFSSEDIGNADPNALNLAVSTLEAVKNIGYPEARIILAQCVVYLASTIKSNASYKAINE
ALNYVKNNEALEIPNYLNNNHQEKQNYLYPHDFGGWVEQKYLSKNLKFYHSKGLGEEAKLLDNLYKLKNHKA

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=430, Percent_Identity=31.8604651162791, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI18426904, Length=405, Percent_Identity=31.1111111111111, Blast_Score=162, Evalue=5e-40,
Organism=Escherichia coli, GI1787119, Length=379, Percent_Identity=31.9261213720317, Blast_Score=192, Evalue=4e-50,
Organism=Escherichia coli, GI1788167, Length=121, Percent_Identity=38.0165289256198, Blast_Score=65, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6324111, Length=444, Percent_Identity=31.981981981982, Blast_Score=189, Evalue=7e-49,
Organism=Saccharomyces cerevisiae, GI6324039, Length=204, Percent_Identity=27.4509803921569, Blast_Score=70, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro; PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 44792; Mature: 44661

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAGSGKTTFARVVAKEFGL
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCHHHHHHHHHHHHCC
DFYEFDGGNFKLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIG
CEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEEEE
ASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSADA
CCCCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH
RAMLNLLEFVLVLDEKHISLENLKKLRNTINSEGVSSKDTHYILASAMIKSLRGSDVDAA
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
IYYLARLIDAGESADFIARRLVIFSSEDIGNADPNALNLAVSTLEAVKNIGYPEARIILA
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
QCVVYLASTIKSNASYKAINEALNYVKNNEALEIPNYLNNNHQEKQNYLYPHDFGGWVEQ
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEECCHHHCCCCHHHHCCCCCCCCCHHHHH
KYLSKNLKFYHSKGLGEEAKLLDNLYKLKNHKA
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAGSGKTTFARVVAKEFGL
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCHHHHHHHHHHHHCC
DFYEFDGGNFKLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIG
CEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEEEE
ASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDKEAKDFLLKSADA
CCCCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH
RAMLNLLEFVLVLDEKHISLENLKKLRNTINSEGVSSKDTHYILASAMIKSLRGSDVDAA
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
IYYLARLIDAGESADFIARRLVIFSSEDIGNADPNALNLAVSTLEAVKNIGYPEARIILA
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
QCVVYLASTIKSNASYKAINEALNYVKNNEALEIPNYLNNNHQEKQNYLYPHDFGGWVEQ
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEECCHHHCCCCHHHHCCCCCCCCCHHHHH
KYLSKNLKFYHSKGLGEEAKLLDNLYKLKNHKA
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]