| Definition | Campylobacter jejuni RM1221, complete genome. |
|---|---|
| Accession | NC_003912 |
| Length | 1,777,831 |
Click here to switch to the map view.
The map label for this gene is 57237183
Identifier: 57237183
GI number: 57237183
Start: 171793
End: 174060
Strand: Direct
Name: 57237183
Synonym: CJE0171
Alternate gene names: NA
Gene position: 171793-174060 (Clockwise)
Preceding gene: 57237182
Following gene: 57237184
Centisome position: 9.66
GC content: 34.3
Gene sequence:
>2268_bases ATGAAAAAATTAAGTTTATTTTGTGCTGTAGGTTTATGTTTTGCTAGTTTTGCTTTTTCTGAAGAATTAGAATTTGATAG TCTTGAAATTTCAGGTTCAAAAATCAAAAACGATGAAAAACCTTTTGTAACTCCTGGAGCAACAAGCACAAGAGAGGATA TAGGTTCAGATACACAAAGTATAGATTCTATAGTGCGTAGTATACCTGGAACCTACACAAACACAGATCAAGCTCAAGGT ACAGTTCAAGTAAATATTCGTGGTATGAGTGGTTTTGGGCGTGTTAATACCATGATTGACGGTGTTACTCAAACTTTTTA TGGTAGTGCATCAGATGATCCAGCTAGATTTCATTCACAAACGGGAACTTCAGCTTTTGGAGCTGTTATTGATACAAATT TCTTAATCGGAGTTGATGTTACAAGGGGAACTTTTGAAGGAGTAGGTGAAGCAAATGCCTTGATGGGATCAGCAAATTTT AAGACCATAGGTATAAATGATATTGTACATGATGGCAATATCTTTGGATTTTTAGGACGATTTTCTTATGGAAGCAATGG AATCGGACCAAGTTATATGAGTGCAGTGGCTGGAAAGACTGAACTTGAAAATAATGGATATGTGGGCGCGCTTTTTGGTT ATAGCGCAAAGAGAATTACTCAAAATTACACTGTAGGCGGGGGTGGCAAGATAGGTAGTAGTATGGTTGATACTGATGGA GATGGTATAGCTGATACCAATATCGCTCCTTTTGATCCAGATTTTTTAACCCAAAAACCAAACTCTCAACTTTTTAAACT CGAATATGTCCCAAATTCTTTTACAAACACTATATTTTCTTATCGTAGATATCAAAACGAACTTGCCGGTAGAAAAATAC ACAATGACAATTATCAACTTGATTTTTGGCACAACCCTAATGAGTGGCTTAATGTAAATACGCTTATTGCCTACAATCAA GGCATACAAACCTATGGATCAAAATCTACTTTTGCGGCAAACGATGCCATAGCTAACACAAAGGCAAAAAATACTGCCAC TACTTTTGATATAAGTGATACTTTAGAGGGTGAATGGCATGGATTTAATCTAAACACACGCTTTGGAGCAAATATTTTGC TTAATGATTATAAAAATACCTTAAATACATCAATTCAAGGAGTAAATTCTATACCTTTTCAGCCTCGTGGAAAACAAAAT CTTTTTACTTATTATCTTGATAATAGTCTAAATTATGGTATCTTTACACTTGATACCAATGTGAATCTTTTAGATTGGAA TATCAAAGGACACAGACCTGCTTGCGATGAAGTAAATTTTATGTGTTTTCCAAAAGCGGCGACAGATATAGATAAAAATG GACTTCGCCTGAATGCTTCTGTCATGCTTTCAGCTGCCATACACGAGCTTTTTACACCCTTTGTAAGTTTTGCGAGAACA AATAGAGCCCCTAATGTGCAAGAAATGTTTTTCTCAAATAACGAAGGCAATGGTATCAATCCTTTCTTAAAACCAGAACA AGCCAATACTTGGCAAATAGGTTTTAATTCTTTTAAACATGGACTTTTAAAAGATGATGATCGCTTTGGTTTTAAAGCCG TGTATTATCATACAAAAATAAAAGATTATATTTATAATGAACAATTTTATCTTGAAGATCCAAGTAAAGATCCTCCAAGC TCGCAATTTTATATGCACTTAAATTCAGCTGATGATACCATATTTAAGGGTGTGGAGTTAGAATTAAGCTATGACTTGGG TTTTGCTTATGCTAAAGCTATGTATTCAAGACAAGATACAAGTTCGACTATTTCTCAAACTTCAGGACCTCTTCTTGGCT CTTTTTCGGCAAGTAAAATCATGGAGCTTCCAAAAGATTATGCAAATGTAGAGCTTGGCTTTAGGTTAAATGATAAAATA AGCTTTGGTGGTATAGCAAAATACACAGGCAAAGCAAAAAGGGTAAATCCAAATACAGATGATTGGAATAAGGATCCAAA CAATCCTTATTATCCTAAACCAACCACACAAGACTTACCAAAAATTCCTATTATAGTAGATTTATATTGGAATATAGAAT GGTTTAAAAACCTCACAATGAGAGCAGAGGTGCAAAATTTATTTGATAAAAACTACATGGATGCCTTAAATGCTTATAAT TCCTTAGATAATCAGCTTCAATATAATGGAGCAGGTGATCCTATCTATCTTTTTAGCAATTCTGCTCGTGGTCGCACCTT TGTAGTAAGTTTTGAATATAAATATTAA
Upstream 100 bases:
>100_bases AAGATTTTAAAAGCAGTAAAAAAATAGTTGTAGTGAATTTAAGCTATGGAGAAATAGATTTAAAAGACAGTGATTATGTT TTGATTTATAAGGGGGAGGA
Downstream 100 bases:
>100_bases GGAATATACAAATGTTAAAAAAAATATTTTTATTTTGTTTTTTATTGTTAAATTTAAATGCTGAAGTAAATGTAACAGAT ACAAATTTATCTTTTGATTC
Product: TonB-dependent colicin receptor protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 755; Mature: 755
Protein sequence:
>755_residues MKKLSLFCAVGLCFASFAFSEELEFDSLEISGSKIKNDEKPFVTPGATSTREDIGSDTQSIDSIVRSIPGTYTNTDQAQG TVQVNIRGMSGFGRVNTMIDGVTQTFYGSASDDPARFHSQTGTSAFGAVIDTNFLIGVDVTRGTFEGVGEANALMGSANF KTIGINDIVHDGNIFGFLGRFSYGSNGIGPSYMSAVAGKTELENNGYVGALFGYSAKRITQNYTVGGGGKIGSSMVDTDG DGIADTNIAPFDPDFLTQKPNSQLFKLEYVPNSFTNTIFSYRRYQNELAGRKIHNDNYQLDFWHNPNEWLNVNTLIAYNQ GIQTYGSKSTFAANDAIANTKAKNTATTFDISDTLEGEWHGFNLNTRFGANILLNDYKNTLNTSIQGVNSIPFQPRGKQN LFTYYLDNSLNYGIFTLDTNVNLLDWNIKGHRPACDEVNFMCFPKAATDIDKNGLRLNASVMLSAAIHELFTPFVSFART NRAPNVQEMFFSNNEGNGINPFLKPEQANTWQIGFNSFKHGLLKDDDRFGFKAVYYHTKIKDYIYNEQFYLEDPSKDPPS SQFYMHLNSADDTIFKGVELELSYDLGFAYAKAMYSRQDTSSTISQTSGPLLGSFSASKIMELPKDYANVELGFRLNDKI SFGGIAKYTGKAKRVNPNTDDWNKDPNNPYYPKPTTQDLPKIPIIVDLYWNIEWFKNLTMRAEVQNLFDKNYMDALNAYN SLDNQLQYNGAGDPIYLFSNSARGRTFVVSFEYKY
Sequences:
>Translated_755_residues MKKLSLFCAVGLCFASFAFSEELEFDSLEISGSKIKNDEKPFVTPGATSTREDIGSDTQSIDSIVRSIPGTYTNTDQAQG TVQVNIRGMSGFGRVNTMIDGVTQTFYGSASDDPARFHSQTGTSAFGAVIDTNFLIGVDVTRGTFEGVGEANALMGSANF KTIGINDIVHDGNIFGFLGRFSYGSNGIGPSYMSAVAGKTELENNGYVGALFGYSAKRITQNYTVGGGGKIGSSMVDTDG DGIADTNIAPFDPDFLTQKPNSQLFKLEYVPNSFTNTIFSYRRYQNELAGRKIHNDNYQLDFWHNPNEWLNVNTLIAYNQ GIQTYGSKSTFAANDAIANTKAKNTATTFDISDTLEGEWHGFNLNTRFGANILLNDYKNTLNTSIQGVNSIPFQPRGKQN LFTYYLDNSLNYGIFTLDTNVNLLDWNIKGHRPACDEVNFMCFPKAATDIDKNGLRLNASVMLSAAIHELFTPFVSFART NRAPNVQEMFFSNNEGNGINPFLKPEQANTWQIGFNSFKHGLLKDDDRFGFKAVYYHTKIKDYIYNEQFYLEDPSKDPPS SQFYMHLNSADDTIFKGVELELSYDLGFAYAKAMYSRQDTSSTISQTSGPLLGSFSASKIMELPKDYANVELGFRLNDKI SFGGIAKYTGKAKRVNPNTDDWNKDPNNPYYPKPTTQDLPKIPIIVDLYWNIEWFKNLTMRAEVQNLFDKNYMDALNAYN SLDNQLQYNGAGDPIYLFSNSARGRTFVVSFEYKY >Mature_755_residues MKKLSLFCAVGLCFASFAFSEELEFDSLEISGSKIKNDEKPFVTPGATSTREDIGSDTQSIDSIVRSIPGTYTNTDQAQG TVQVNIRGMSGFGRVNTMIDGVTQTFYGSASDDPARFHSQTGTSAFGAVIDTNFLIGVDVTRGTFEGVGEANALMGSANF KTIGINDIVHDGNIFGFLGRFSYGSNGIGPSYMSAVAGKTELENNGYVGALFGYSAKRITQNYTVGGGGKIGSSMVDTDG DGIADTNIAPFDPDFLTQKPNSQLFKLEYVPNSFTNTIFSYRRYQNELAGRKIHNDNYQLDFWHNPNEWLNVNTLIAYNQ GIQTYGSKSTFAANDAIANTKAKNTATTFDISDTLEGEWHGFNLNTRFGANILLNDYKNTLNTSIQGVNSIPFQPRGKQN LFTYYLDNSLNYGIFTLDTNVNLLDWNIKGHRPACDEVNFMCFPKAATDIDKNGLRLNASVMLSAAIHELFTPFVSFART NRAPNVQEMFFSNNEGNGINPFLKPEQANTWQIGFNSFKHGLLKDDDRFGFKAVYYHTKIKDYIYNEQFYLEDPSKDPPS SQFYMHLNSADDTIFKGVELELSYDLGFAYAKAMYSRQDTSSTISQTSGPLLGSFSASKIMELPKDYANVELGFRLNDKI SFGGIAKYTGKAKRVNPNTDDWNKDPNNPYYPKPTTQDLPKIPIIVDLYWNIEWFKNLTMRAEVQNLFDKNYMDALNAYN SLDNQLQYNGAGDPIYLFSNSARGRTFVVSFEYKY
Specific function: Probable receptor, tonB-dependent [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 84163; Mature: 84163
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLSLFCAVGLCFASFAFSEELEFDSLEISGSKIKNDEKPFVTPGATSTREDIGSDTQS CCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEECCCCCCCHHHHCCCHHH IDSIVRSIPGTYTNTDQAQGTVQVNIRGMSGFGRVNTMIDGVTQTFYGSASDDPARFHSQ HHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCC TGTSAFGAVIDTNFLIGVDVTRGTFEGVGEANALMGSANFKTIGINDIVHDGNIFGFLGR CCCCHHHHEEECCEEEEEEECCCCCCCCCCCHHEECCCCEEEECCHHEEECCCEEEEEEE FSYGSNGIGPSYMSAVAGKTELENNGYVGALFGYSAKRITQNYTVGGGGKIGSSMVDTDG CCCCCCCCCHHHHHHHCCCCEECCCCCEEEEECCCHHHHCCCEEECCCCCCCCCCCCCCC DGIADTNIAPFDPDFLTQKPNSQLFKLEYVPNSFTNTIFSYRRYQNELAGRKIHNDNYQL CCCCCCCCCCCCCHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEE DFWHNPNEWLNVNTLIAYNQGIQTYGSKSTFAANDAIANTKAKNTATTFDISDTLEGEWH EEEECCCCEEEEEEEEEECCCHHHCCCCCEEECCCHHCCCCCCCCEEEEECCCCCCCCEE GFNLNTRFGANILLNDYKNTLNTSIQGVNSIPFQPRGKQNLFTYYLDNSLNYGIFTLDTN EECCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECC VNLLDWNIKGHRPACDEVNFMCFPKAATDIDKNGLRLNASVMLSAAIHELFTPFVSFART CEEEEEECCCCCCCCCCCCEEEECCHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHC NRAPNVQEMFFSNNEGNGINPFLKPEQANTWQIGFNSFKHGLLKDDDRFGFKAVYYHTKI CCCCCHHHHHEECCCCCCCCCCCCCCCCCEEEECHHHHCCCCCCCCCCCCEEEEEEEEEH KDYIYNEQFYLEDPSKDPPSSQFYMHLNSADDTIFKGVELELSYDLGFAYAKAMYSRQDT HHHHCCCEEEEECCCCCCCCCEEEEEECCCCCCEECCEEEEEEECCHHHHHHHHHHCCCC SSTISQTSGPLLGSFSASKIMELPKDYANVELGFRLNDKISFGGIAKYTGKAKRVNPNTD HHHHHHCCCCEEECCCHHHHHHCCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCC DWNKDPNNPYYPKPTTQDLPKIPIIVDLYWNIEWFKNLTMRAEVQNLFDKNYMDALNAYN CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHH SLDNQLQYNGAGDPIYLFSNSARGRTFVVSFEYKY HHCCCEEECCCCCEEEEEECCCCCEEEEEEEEECC >Mature Secondary Structure MKKLSLFCAVGLCFASFAFSEELEFDSLEISGSKIKNDEKPFVTPGATSTREDIGSDTQS CCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEECCCCCCCHHHHCCCHHH IDSIVRSIPGTYTNTDQAQGTVQVNIRGMSGFGRVNTMIDGVTQTFYGSASDDPARFHSQ HHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCC TGTSAFGAVIDTNFLIGVDVTRGTFEGVGEANALMGSANFKTIGINDIVHDGNIFGFLGR CCCCHHHHEEECCEEEEEEECCCCCCCCCCCHHEECCCCEEEECCHHEEECCCEEEEEEE FSYGSNGIGPSYMSAVAGKTELENNGYVGALFGYSAKRITQNYTVGGGGKIGSSMVDTDG CCCCCCCCCHHHHHHHCCCCEECCCCCEEEEECCCHHHHCCCEEECCCCCCCCCCCCCCC DGIADTNIAPFDPDFLTQKPNSQLFKLEYVPNSFTNTIFSYRRYQNELAGRKIHNDNYQL CCCCCCCCCCCCCHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEE DFWHNPNEWLNVNTLIAYNQGIQTYGSKSTFAANDAIANTKAKNTATTFDISDTLEGEWH EEEECCCCEEEEEEEEEECCCHHHCCCCCEEECCCHHCCCCCCCCEEEEECCCCCCCCEE GFNLNTRFGANILLNDYKNTLNTSIQGVNSIPFQPRGKQNLFTYYLDNSLNYGIFTLDTN EECCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECC VNLLDWNIKGHRPACDEVNFMCFPKAATDIDKNGLRLNASVMLSAAIHELFTPFVSFART CEEEEEECCCCCCCCCCCCEEEECCHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHC NRAPNVQEMFFSNNEGNGINPFLKPEQANTWQIGFNSFKHGLLKDDDRFGFKAVYYHTKI CCCCCHHHHHEECCCCCCCCCCCCCCCCCEEEECHHHHCCCCCCCCCCCCEEEEEEEEEH KDYIYNEQFYLEDPSKDPPSSQFYMHLNSADDTIFKGVELELSYDLGFAYAKAMYSRQDT HHHHCCCEEEEECCCCCCCCCEEEEEECCCCCCEECCEEEEEEECCHHHHHHHHHHCCCC SSTISQTSGPLLGSFSASKIMELPKDYANVELGFRLNDKISFGGIAKYTGKAKRVNPNTD HHHHHHCCCCEEECCCHHHHHHCCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCC DWNKDPNNPYYPKPTTQDLPKIPIIVDLYWNIEWFKNLTMRAEVQNLFDKNYMDALNAYN CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHH SLDNQLQYNGAGDPIYLFSNSARGRTFVVSFEYKY HHCCCEEECCCCCEEEEEECCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]