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The map label for this gene is ybeY [C]

Identifier: 57237128

GI number: 57237128

Start: 123265

End: 123672

Strand: Direct

Name: ybeY [C]

Synonym: CJE0116

Alternate gene names: 57237128

Gene position: 123265-123672 (Clockwise)

Preceding gene: 57237127

Following gene: 57237129

Centisome position: 6.93

GC content: 31.37

Gene sequence:

>408_bases
ATGATATTAAGTGATGAAAAATGTGATTTTTTAGAATCTATAGCAAGTTTTTTAAGTCCTAAAGATGTGGAGCTTGTCTT
TGTGGATAGTAAAGAAATGCAAGAAATTAACTTAGAGCAAAGAAAACAAGATAAAACCACTGATGTACTTTCTTTTCCAC
TTGAAAATATCGATGAGAGTTTGCCTTTGGGTTCTGTTGTGATCAATGTGGATTTGGCAAAAGAAAAGGCTAAAGAGTTA
GGGCATAGCTATGAAGAAGAAATAAGCTTGCTTTTTATCCACGCTATGCTTCATTTGTTAGGTTTTGATCATGAAAATGA
TAATGGAGAAATGAGAGAAAAAGAGAAAGAACTTATAGAGCATTTTAATTTACCTAAAAGTTTGATTGTAAGGACTTTGG
AAGATTAA

Upstream 100 bases:

>100_bases
TTGAAGAGAAAAAACTAAAACAATTTTATAGTAGTAAAAATTGTGCGATTTTTGATGATGAAGAAATAGAAAATTTATAT
CATTTGATTAAGGAAGGTTT

Downstream 100 bases:

>100_bases
GTAAGATTTTTTTCAAGGGCTAGAAGACTTGCGCTTTATATTTTAAATATATGAGTAAAAATATTAAAAAAAATCATTTT
TGCCGATTTACTTTAGAATA

Product: metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQDKTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKEL
GHSYEEEISLLFIHAMLHLLGFDHENDNGEMREKEKELIEHFNLPKSLIVRTLED

Sequences:

>Translated_135_residues
MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQDKTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKEL
GHSYEEEISLLFIHAMLHLLGFDHENDNGEMREKEKELIEHFNLPKSLIVRTLED
>Mature_135_residues
MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQDKTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKEL
GHSYEEEISLLFIHAMLHLLGFDHENDNGEMREKEKELIEHFNLPKSLIVRTLED

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=94, Percent_Identity=38.2978723404255, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_CAMJE (Q9PJ06)

Other databases:

- EMBL:   AL111168
- PIR:   A81429
- RefSeq:   YP_002343581.1
- ProteinModelPortal:   Q9PJ06
- SMR:   Q9PJ06
- IntAct:   Q9PJ06
- GeneID:   904453
- GenomeReviews:   AL111168_GR
- KEGG:   cje:Cj0121
- HOGENOM:   HBG734136
- OMA:   GCDYATD
- PhylomeDB:   Q9PJ06
- ProtClustDB:   PRK00016
- BioCyc:   CJEJ192222:CJ0121-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 15558; Mature: 15558

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQDKTTDVLSFPLENIDES
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHCCHHHHHHCHHHHHHHCCHHHHHCC
LPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGFDHENDNGEMREKEKELIE
CCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
HFNLPKSLIVRTLED
HHCCCHHHHHHHCCC
>Mature Secondary Structure
MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQDKTTDVLSFPLENIDES
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHCCHHHHHHCHHHHHHHCCHHHHHCC
LPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGFDHENDNGEMREKEKELIE
CCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
HFNLPKSLIVRTLED
HHCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10688204