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The map label for this gene is exbD [C]

Identifier: 57237117

GI number: 57237117

Start: 115272

End: 115661

Strand: Direct

Name: exbD [C]

Synonym: CJE0105

Alternate gene names: 57237117

Gene position: 115272-115661 (Clockwise)

Preceding gene: 57237116

Following gene: 57237118

Centisome position: 6.48

GC content: 28.21

Gene sequence:

>390_bases
ATGCCATTTGATGATGAAAAACCTGAACTTAATATCACACCTTTAGTAGATATTATGCTTGTATTGCTTGCGATTTTAAT
GGTAACAGCTCCAAGCATTACTTATGAAGAAAAAATTAATCTTCCACAAGGTAGTCAAAAAAATACTAGCGCTCCAACTG
TTAAGAGTTTAATTATTAGTATTAATGCAAAAAAAGAAATTTTTTTAAATCAAGAAAAATACGATTTTATAAGTTTTGCT
GATAATCTTGCTCAAAGAAAAGCACAATTTAATACCGAAGATCCGGTTTTTATACGCGCTGATAAAAGCTTAAAATATGA
CGATGTTATTTCAGTCTTAAGAAGTGTAAAAAATTTAGGATTTAATAAAGTTGCTTTACAGACTGAATAA

Upstream 100 bases:

>100_bases
CTTATACATTTCATCTCATCATTAAAAGAAAAGCTTTTGAACTTTTAAGCATTATTGATAGCGAGATTAAAGTTATAAGT
TCGAGTAAATAAGGTTAAAA

Downstream 100 bases:

>100_bases
TCATGAAAAATTATGGTTTGAGTAATTTAAATTCGTTTTTACTTGCTTTAGCAATATATGTTGGTATAGTAATTCTTGTT
TTTTTTAGACTTGTAAGCGA

Product: TonB system transport protein ExbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQGSQKNTSAPTVKSLIISINAKKEIFLNQEKYDFISFA
DNLAQRKAQFNTEDPVFIRADKSLKYDDVISVLRSVKNLGFNKVALQTE

Sequences:

>Translated_129_residues
MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQGSQKNTSAPTVKSLIISINAKKEIFLNQEKYDFISFA
DNLAQRKAQFNTEDPVFIRADKSLKYDDVISVLRSVKNLGFNKVALQTE
>Mature_128_residues
PFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQGSQKNTSAPTVKSLIISINAKKEIFLNQEKYDFISFAD
NLAQRKAQFNTEDPVFIRADKSLKYDDVISVLRSVKNLGFNKVALQTE

Specific function: Involved In The Tonb-Dependent Energy-Dependent Transport Of Various Receptor-Bound Substrates. [C]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=127, Percent_Identity=30.7086614173228, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14562; Mature: 14431

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQGSQKNTSAPTVKSLIIS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHC
INAKKEIFLNQEKYDFISFADNLAQRKAQFNTEDPVFIRADKSLKYDDVISVLRSVKNLG
CCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
FNKVALQTE
CCEEEEECC
>Mature Secondary Structure 
PFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQGSQKNTSAPTVKSLIIS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHC
INAKKEIFLNQEKYDFISFADNLAQRKAQFNTEDPVFIRADKSLKYDDVISVLRSVKNLG
CCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
FNKVALQTE
CCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]