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The map label for this gene is atpD [H]

Identifier: 57237114

GI number: 57237114

Start: 112919

End: 114316

Strand: Direct

Name: atpD [H]

Synonym: CJE0102

Alternate gene names: 57237114

Gene position: 112919-114316 (Clockwise)

Preceding gene: 57237113

Following gene: 57237115

Centisome position: 6.35

GC content: 35.12

Gene sequence:

>1398_bases
ATGCAAGGATTTATTTCACAGGTATTAGGTCCGGTTGTTGATGTAGATTTTAACGACTATTTACCTCAAATTAATGAAGC
AATTGTTGTAAATTTTGAAAGCGAAGGAAAAAAACATAAACTTGTTTTAGAAGTAGCAGCTCATTTAGGAGATAATAGAG
TTAGAACTATTGCTATGGATATGACAGATGGTTTGGTAAGGGGCTTAAAAGCTGAGGCTTTAGGTGCTCCTATTAGTGTT
CCTGTTGGTGAGAAAGTTTTAGGAAGAATTTTCAATGTTACTGGAGATTTGATCGATGAAGGTGAAGAAATTTCTTTTGA
TAAAAAATGGGCAATTCATAGAGATCCACCAGCTTTTGAAGATCAAAGCACAAAAAGTGAGATTTTTGAAACAGGGATTA
AAGTTGTAGATTTACTTGCTCCTTATGCAAAAGGTGGTAAAGTAGGTCTTTTTGGTGGTGCAGGTGTTGGTAAAACTGTT
ATTATTATGGAGCTTATTCACAATGTTGCATTTAAGCATAGCGGCTATTCTGTATTTGCAGGTGTGGGTGAGAGAACTCG
TGAAGGAAATGACCTTTATAATGAAATGAAAGAAAGTAATGTTTTAGACAAAGTTGCTCTATGTTATGGACAAATGAATG
AACCACCAGGGGCAAGAAATCGTATTGCTTTAACAGGTTTAACAATGGCTGAGTATTTTAGAGATGAAATGGGTCTTGAT
GTGCTTATGTTTATTGATAATATCTTTAGATTTTCACAATCAGGTTCTGAAATGTCAGCACTTTTAGGAAGAATTCCATC
AGCTGTGGGTTATCAACCAACCTTAGCAAGTGAAATGGGTAAATTCCAAGAAAGAATTACTTCAACTAAAAAAGGCTCAA
TCACTTCAGTTCAAGCTGTTTACGTTCCAGCTGATGACTTAACAGACCCAGCTCCAGCAACTGTTTTTGCTCACTTAGAT
GCTACAACGGTTTTAAATAGAGCTATTGCTGAAAAGGGTATTTATCCTGCAGTTGACCCACTTGACTCAACTTCAAGAAT
GCTTGATCCAAATATCATTGGAGAAGAACATTATAAAGTTGCTCGTGGTGTTCAATCAGTGCTTCAAAAATACAAAGATT
TACAAGATATCATCGCCATTTTAGGTATGGATGAGCTTAGCGAAGAGGATAAACTTGTAGTTGAAAGAGCAAGAAAGATT
GAAAAATTCTTATCACAACCATTTTTCGTTGCAGAAGTTTTCACAGGTAGCCCAGGAAAATATATAAGCCTTGAAGATAC
AATAGCAGGATTTAAGGGAATTTTAGAAGGTAAATATGATCATTTACCAGAAAATGCTTTCTATATGGTTGGAAATATAG
ATGAAGCTATTGCAAAAGCGGATAAATTAAAAGGTTAA

Upstream 100 bases:

>100_bases
TATAACAAAGCAAGACAAGAATCCATTACTACTGAGCTTATAGAGATTATCAGTGGTGTTGAATCAATGAAATAGTAAAA
TTTTAAGGAGAAGATAAATA

Downstream 100 bases:

>100_bases
TTTATGAACGATTTGATTAATTTCGAGATAGTTACGCCTTTGGGTGTAATCTATCAAGGAGAAGTAAAATCTGTTACTTT
ACCGGGTAGTGAAGGAGAAT

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLEVAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISV
PVGEKVLGRIFNVTGDLIDEGEEISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGARNRIALTGLTMAEYFRDEMGLD
VLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLASEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLD
ATTVLNRAIAEKGIYPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKLVVERARKI
EKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMVGNIDEAIAKADKLKG

Sequences:

>Translated_465_residues
MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLEVAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISV
PVGEKVLGRIFNVTGDLIDEGEEISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGARNRIALTGLTMAEYFRDEMGLD
VLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLASEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLD
ATTVLNRAIAEKGIYPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKLVVERARKI
EKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMVGNIDEAIAKADKLKG
>Mature_465_residues
MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLEVAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISV
PVGEKVLGRIFNVTGDLIDEGEEISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGARNRIALTGLTMAEYFRDEMGLD
VLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLASEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLD
ATTVLNRAIAEKGIYPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKLVVERARKI
EKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMVGNIDEAIAKADKLKG

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=467, Percent_Identity=71.7344753747323, Blast_Score=665, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=329, Percent_Identity=28.5714285714286, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI19913428, Length=431, Percent_Identity=24.8259860788863, Blast_Score=122, Evalue=9e-28,
Organism=Homo sapiens, GI19913426, Length=431, Percent_Identity=24.5939675174014, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI50345984, Length=284, Percent_Identity=25.3521126760563, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI4757810, Length=284, Percent_Identity=25.3521126760563, Blast_Score=92, Evalue=1e-18,
Organism=Escherichia coli, GI1790170, Length=462, Percent_Identity=69.9134199134199, Blast_Score=657, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=367, Percent_Identity=26.4305177111717, Blast_Score=118, Evalue=7e-28,
Organism=Escherichia coli, GI1790172, Length=430, Percent_Identity=23.2558139534884, Blast_Score=99, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI25144756, Length=467, Percent_Identity=68.7366167023555, Blast_Score=642, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=330, Percent_Identity=29.0909090909091, Blast_Score=136, Evalue=3e-32,
Organism=Caenorhabditis elegans, GI17570191, Length=422, Percent_Identity=24.8815165876777, Blast_Score=126, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17510931, Length=416, Percent_Identity=25.2403846153846, Blast_Score=122, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI71988080, Length=284, Percent_Identity=24.2957746478873, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71988063, Length=284, Percent_Identity=24.2957746478873, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71988074, Length=266, Percent_Identity=22.9323308270677, Blast_Score=69, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6322581, Length=463, Percent_Identity=69.3304535637149, Blast_Score=645, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=422, Percent_Identity=26.0663507109005, Blast_Score=125, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6320016, Length=233, Percent_Identity=26.6094420600858, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6319370, Length=360, Percent_Identity=23.8888888888889, Blast_Score=85, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24638766, Length=467, Percent_Identity=72.1627408993576, Blast_Score=665, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=468, Percent_Identity=65.3846153846154, Blast_Score=608, Evalue=1e-174,
Organism=Drosophila melanogaster, GI20129479, Length=387, Percent_Identity=28.1653746770026, Blast_Score=134, Evalue=2e-31,
Organism=Drosophila melanogaster, GI24583992, Length=321, Percent_Identity=28.6604361370716, Blast_Score=130, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24583988, Length=321, Percent_Identity=28.3489096573209, Blast_Score=129, Evalue=4e-30,
Organism=Drosophila melanogaster, GI24583986, Length=321, Percent_Identity=28.3489096573209, Blast_Score=129, Evalue=4e-30,
Organism=Drosophila melanogaster, GI24583984, Length=321, Percent_Identity=28.3489096573209, Blast_Score=129, Evalue=4e-30,
Organism=Drosophila melanogaster, GI281361666, Length=423, Percent_Identity=25.531914893617, Blast_Score=121, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24646341, Length=423, Percent_Identity=25.531914893617, Blast_Score=121, Evalue=1e-27,
Organism=Drosophila melanogaster, GI17136796, Length=423, Percent_Identity=25.531914893617, Blast_Score=121, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24638768, Length=94, Percent_Identity=55.3191489361702, Blast_Score=93, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24658560, Length=284, Percent_Identity=24.2957746478873, Blast_Score=89, Evalue=5e-18,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50851; Mature: 50851

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLEVAAHLGDNRVRTIAMD
CCHHHHHHHHHHEECCHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEH
MTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGEEISFDKKWAIHRDPPAFE
HHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
DQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTVIIMELIHNVAFKHSGYSVFA
CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
GVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGARNRIALTGLTMAEYFRDEMGLD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCH
VLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLASEMGKFQERITSTKKGSITSVQAV
HHHHHHHHHHHCCCCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
YVPADDLTDPAPATVFAHLDATTVLNRAIAEKGIYPAVDPLDSTSRMLDPNIIGEEHYKV
EECCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHH
ARGVQSVLQKYKDLQDIIAILGMDELSEEDKLVVERARKIEKFLSQPFFVAEVFTGSPGK
HHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
YISLEDTIAGFKGILEGKYDHLPENAFYMVGNIDEAIAKADKLKG
EEEHHHHHHHHHHHHCCHHHCCCCCCEEEECCHHHHHHHHHHCCC
>Mature Secondary Structure
MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLEVAAHLGDNRVRTIAMD
CCHHHHHHHHHHEECCHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEH
MTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGEEISFDKKWAIHRDPPAFE
HHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
DQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTVIIMELIHNVAFKHSGYSVFA
CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
GVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGARNRIALTGLTMAEYFRDEMGLD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCH
VLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLASEMGKFQERITSTKKGSITSVQAV
HHHHHHHHHHHCCCCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
YVPADDLTDPAPATVFAHLDATTVLNRAIAEKGIYPAVDPLDSTSRMLDPNIIGEEHYKV
EECCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHH
ARGVQSVLQKYKDLQDIIAILGMDELSEEDKLVVERARKIEKFLSQPFFVAEVFTGSPGK
HHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
YISLEDTIAGFKGILEGKYDHLPENAFYMVGNIDEAIAKADKLKG
EEEHHHHHHHHHHHHCCHHHCCCCCCEEEECCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA