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The map label for this gene is ykgF [H]

Identifier: 57237082

GI number: 57237082

Start: 83739

End: 85178

Strand: Reverse

Name: ykgF [H]

Synonym: CJE0070

Alternate gene names: 57237082

Gene position: 85178-83739 (Counterclockwise)

Preceding gene: 57237083

Following gene: 57237081

Centisome position: 4.79

GC content: 35.21

Gene sequence:

>1440_bases
ATGAGTCAAAAAATTCCTCACGAACAAATCGTTCAAATTAAACTCAATGACAAACAAATGCAAGAAAATTTAATGACTGC
CATGCATACTTTGCAAAAAAATAGACTCAATGTTATTGATGCTAGATTTAAAGACTGGCAGGGTTTAAGATCTAAAGCTA
AACAAGCTAAAAACAATGCCTTAATGAGTTTAGAAGAAAGGCTTTTAGAATTTGAAAAAAATGCTACAAAAAATGGCATT
AAAGTGCATTGGGCAAGTAGTGATGAAGATGCCTGTGAAATCGTCTATGAAATCATGAAAGAAAAAAATATCACCAAGCT
TTTAAAAGGTAAATCTATGGCAAGCGAAGAAATAGGCCTAAATCACTACCTAGAAAAAAAAGGGTTAAAAGCTATAGAAA
CCGATCTTGGAGAGCTTATTTTGCAACTTAACGAAGAGCCTCCTTTACATATAGTTGTACCTGCTATACATAGAAACCGT
CATGAAATCGGAGAAATTTTCAAAGAAAAATTAGGAGCAAATTTAGAAAACGATGAACCTGAAAGTTTAAATGCGGTAGC
TAGAGAACATTTAAGAAAAGATTTTGAAGGCTTAAAACTTGGACTTAGTGGGGTCAATTTTGCCATGTCAAGAGAAGGGG
CTTTTTGGCTTATAGAAAATGAAGGAAACGGTAGAATGTGCACTACAGCACCTGATATTCATATCGCACTTTGCGGCATA
GAAAAAGTCATGGAAAGCTTTGAAGATGCGGCTACTATGGTTTCTTTGCTCACTCCTTCAGCCACAGGACAATTTATACC
AACTTATAACAATATCATTACAGGCCCTAGAAAAAATGGGGATTTAGATGGCCCTAAAGAAGTACATGTGATTTTATTTG
ATCACAATCGCTCTAAAATGTTAGCTCATGAGGATTATTATGAGGCTTTGCGTTGTATTCGATGTGGGGCTTGTATGAAT
TTTTGCCCTGTTTATGATCAAATCGGCGGACATGCCTATCAAACCACTTATCCAGGACCTATAGGAGAAGTAATCAGTCC
TAATATTTTTGGTATAGATCATACAGGAGATATTTTGAATTTCTGTTCACTTTGCGGGCGTTGTTCTGAAGTTTGTCCAG
TGCAAATTCCTTTGGCTGATCTTATTCGCAAATTAAGATGCGATAAAATAGGACAAGGTAAAAATCCACCTTTAGGAGCA
AACAATGTTCATCACAATGCCCTAGAAGCCTTTGCTTTTAAACAATTTAAAAATATCGCAACCAATGGAGATAAATGGCG
TTTTTCACTTTCAAAAGCACATTATTTCAACTGGGCAGTGCAAAATTTCGCAAGCATTTTGCCTGTGATTAAAAAATGGT
ACGCTTTTAAAGAATTACCTCAAATTAAAATGGATCTTTATAAAGAAGTGCAAAAACTAGAAGGAGTAAGCTATGAGTAA

Upstream 100 bases:

>100_bases
GTCTTTTAAATATAGATGGCACAATGAAAAGAATGGGTTTGGATATAAAAGGCATACATTTATATGACTTTTTACTTAAA
CGCTTAGAAGGAGAGAGACT

Downstream 100 bases:

>100_bases
AATCGATGAAATTTCAAGCAAAAGTAAAGCAAGTATTTTAGAACATCTTAAAAAAGCTTACAAAGAAACAGACTTTACGC
GTATTGAAAGTATAGATCCT

Product: iron-sulfur cluster binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 479; Mature: 478

Protein sequence:

>479_residues
MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFKDWQGLRSKAKQAKNNALMSLEERLLEFEKNATKNGI
KVHWASSDEDACEIVYEIMKEKNITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
HEIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLIENEGNGRMCTTAPDIHIALCGI
EKVMESFEDAATMVSLLTPSATGQFIPTYNNIITGPRKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMN
FCPVYDQIGGHAYQTTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQGKNPPLGA
NNVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWAVQNFASILPVIKKWYAFKELPQIKMDLYKEVQKLEGVSYE

Sequences:

>Translated_479_residues
MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFKDWQGLRSKAKQAKNNALMSLEERLLEFEKNATKNGI
KVHWASSDEDACEIVYEIMKEKNITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
HEIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLIENEGNGRMCTTAPDIHIALCGI
EKVMESFEDAATMVSLLTPSATGQFIPTYNNIITGPRKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMN
FCPVYDQIGGHAYQTTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQGKNPPLGA
NNVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWAVQNFASILPVIKKWYAFKELPQIKMDLYKEVQKLEGVSYE
>Mature_478_residues
SQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFKDWQGLRSKAKQAKNNALMSLEERLLEFEKNATKNGIK
VHWASSDEDACEIVYEIMKEKNITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNRH
EIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLIENEGNGRMCTTAPDIHIALCGIE
KVMESFEDAATMVSLLTPSATGQFIPTYNNIITGPRKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNF
CPVYDQIGGHAYQTTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQGKNPPLGAN
NVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWAVQNFASILPVIKKWYAFKELPQIKMDLYKEVQKLEGVSYE

Specific function: Unknown

COG id: COG1139

COG function: function code C; Uncharacterized conserved protein containing a ferredoxin-like domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1786498, Length=462, Percent_Identity=38.3116883116883, Blast_Score=350, Evalue=1e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR003741
- InterPro:   IPR004452
- InterPro:   IPR002698
- InterPro:   IPR012285
- InterPro:   IPR009051 [H]

Pfam domain/function: PF02589 DUF162 [H]

EC number: NA

Molecular weight: Translated: 54193; Mature: 54062

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS00018 EF_HAND_1 ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFKDWQGLRSKAKQAKNNA
CCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LMSLEERLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEKNITKLLKGKSMASEEIGL
HHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHCCCCCHHHCCH
NHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNRHEIGEIFKEKLGANLENDEP
HHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCHHHHHHHHHHHHCCCCCCCCC
ESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLIENEGNGRMCTTAPDIHIALCGI
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEECCCCEEEECCCCCEEEEHHH
EKVMESFEDAATMVSLLTPSATGQFIPTYNNIITGPRKNGDLDGPKEVHVILFDHNRSKM
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC
LAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVISPNIFGIDHTGDILN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHCCCCEEECCCCHHHHH
FCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQGKNPPLGANNVHHNALEAFAFKQFKNIA
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
TNGDKWRFSLSKAHYFNWAVQNFASILPVIKKWYAFKELPQIKMDLYKEVQKLEGVSYE
CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFKDWQGLRSKAKQAKNNA
CCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LMSLEERLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEKNITKLLKGKSMASEEIGL
HHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHCCCCCHHHCCH
NHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNRHEIGEIFKEKLGANLENDEP
HHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCHHHHHHHHHHHHCCCCCCCCC
ESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLIENEGNGRMCTTAPDIHIALCGI
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEECCCCEEEECCCCCEEEEHHH
EKVMESFEDAATMVSLLTPSATGQFIPTYNNIITGPRKNGDLDGPKEVHVILFDHNRSKM
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC
LAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVISPNIFGIDHTGDILN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHCCCCEEECCCCHHHHH
FCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQGKNPPLGANNVHHNALEAFAFKQFKNIA
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
TNGDKWRFSLSKAHYFNWAVQNFASILPVIKKWYAFKELPQIKMDLYKEVQKLEGVSYE
CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]