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The map label for this gene is ygdH [C]

Identifier: 57237062

GI number: 57237062

Start: 68423

End: 69028

Strand: Reverse

Name: ygdH [C]

Synonym: CJE0049

Alternate gene names: 57237062

Gene position: 69028-68423 (Counterclockwise)

Preceding gene: 57237063

Following gene: 57237061

Centisome position: 3.88

GC content: 31.19

Gene sequence:

>606_bases
ATGAATGAAAAAATAAGCCAAGATTTAGAAAAATTTGCTAACATACCAAACCTAAAAAATGCCGTAACTTTTTTTGGTTC
AGCAAGACTTAAAGAAGATAATTTTTATTATCAGCAGGCTAAAATTTTGGCACAAAAATGTGTTCAAAATGGTTTTTGTG
TGATAAGTGGTGGAGGTGGTGGTATTATGCGTGCAGCCAACGAAGGTGCTTTTTCACAAAACAATAATACAAATTCAATG
AGTTCTGTAGGGTTTAATATATTTTTACCTCACGAGCAAAAACTTAATGATTTTGTAGAATATAATATTACTTTTGAGAG
CTTAGCCATACGCAAAATGGCTCTTATTGAAAAGAGTCTAGCTTTTGTGATCTTCCCAGGCGGCTTTGGAACACTTGATG
AATTGTGTGAAATTCTTACATTAAAACAGTTAGAATTTAAAAAAGATGTTCCTATTATTTTGTTTGGGAGTGAATTTTGG
CGAGGTTTTGATGAGTTCGTCAGAAATTCTTTACTCAAACTTGAAGTGATTTCTAAAGGAGATGAGTTAAAGTATAAAAT
CACTGACGACTTGGATTTTATAATTAATACTTTAAAGGAAATTTAA

Upstream 100 bases:

>100_bases
TCCTAATCTTAATAAAATAAACCTATTAAAACTTATATAATAAAGAACTTATTATAAATTTTTAGCTAGAATGGAATTTA
TTTTAACTAAAGGTTGAAAA

Downstream 100 bases:

>100_bases
TGAAAATTCTAGTCGCTATGAGCGGTGGAGTTGATAGTACAGTCACTGCTTATAAACTTAAAAATTTAGGTCATGAAGTT
ATAGGTTGTTATATGAAACT

Product: lysine decarboxylase

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDNFYYQQAKILAQKCVQNGFCVISGGGGGIMRAANEGAFSQNNNTNSM
SSVGFNIFLPHEQKLNDFVEYNITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI

Sequences:

>Translated_201_residues
MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDNFYYQQAKILAQKCVQNGFCVISGGGGGIMRAANEGAFSQNNNTNSM
SSVGFNIFLPHEQKLNDFVEYNITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI
>Mature_201_residues
MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDNFYYQQAKILAQKCVQNGFCVISGGGGGIMRAANEGAFSQNNNTNSM
SSVGFNIFLPHEQKLNDFVEYNITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22736; Mature: 22736

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDNFYYQQAKILAQKCVQNGFCVISGGGG
CCCHHHHHHHHHHCCCCHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHCCCEEEECCCC
GIMRAANEGAFSQNNNTNSMSSVGFNIFLPHEQKLNDFVEYNITFESLAIRKMALIEKSL
CEEEECCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHEECCHHHHHHHHHHHHHHCE
AFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFWRGFDEFVRNSLLKLEVISKG
EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHEEEEEECCC
DELKYKITDDLDFIINTLKEI
CCEEEEECCCHHHHHHHHHCC
>Mature Secondary Structure
MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDNFYYQQAKILAQKCVQNGFCVISGGGG
CCCHHHHHHHHHHCCCCHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHCCCEEEECCCC
GIMRAANEGAFSQNNNTNSMSSVGFNIFLPHEQKLNDFVEYNITFESLAIRKMALIEKSL
CEEEECCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHEECCHHHHHHHHHHHHHHCE
AFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFWRGFDEFVRNSLLKLEVISKG
EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHEEEEEECCC
DELKYKITDDLDFIINTLKEI
CCEEEEECCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA