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The map label for this gene is rnhB [H]

Identifier: 57236923

GI number: 57236923

Start: 14088

End: 14663

Strand: Reverse

Name: rnhB [H]

Synonym: CJE0009

Alternate gene names: 57236923

Gene position: 14663-14088 (Counterclockwise)

Preceding gene: 57236924

Following gene: 57236919

Centisome position: 0.82

GC content: 32.29

Gene sequence:

>576_bases
TTGAAAACTTTATTTGACACAAAAGAACTTTTAAACGAATTTGATATAAATTTAATCGGTATTGATGAAGCAGGACGCGG
TGCTTTAGCAGGTCCTATGATGATGGCAGCTTGCAAACTGAACAAACAACTTGATGGGTTGTGTGATTCTAAAAAACTAA
GCGAAAAAAAACGCGAAGAACTTTATGAAATCATCATCAAAAATTCAAACTATCTCATACTTGCTTTTTCTTCAGAACAA
ATCGACGCACTAGGCTTAAGCACTTGTTTAAAAAAAGGCTTAAAACTTATAAAAAAGCATTTTAAAACAGAAAATAACTT
CTTATATGATGGAAACACCAACCTAGGTATAAACGGGATAAAAACACAAATCAAAGCCGACACTAGCATTTTGCAAGTAA
GTGCAGCTAGCATACTCGCAAAAGTTAGTAAAGATAGGGTGATGAATTTCTTAGCTAAAGACTTTCCTTGTTATGAATTT
GAAAAAAACAAAGCCTATGGCACAAAAGCTCATAAAGAATTTATAGCTAAATTTGGAATTTGCAAACTCCACCGAAAAAG
TTTTAAACTTTTATGA

Upstream 100 bases:

>100_bases
TTAAAAAAGTTAAAGGCATAGGTGATAAGCTTTTTGAAAAAATCAAAAATGATATCACAATAGAATAAAAGGGCATTTTT
GCCCTTCTTTTTAGAAAAAT

Downstream 100 bases:

>100_bases
TTATTTTGCTAAATTTTGATGCAAACTCAAAGCACATTCTATACCATCTTTTATAGCCCAAACAACTAAAGATTGTCCTT
TTCTAGCATCTCCACAAGCA

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQLDGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQ
IDALGLSTCLKKGLKLIKKHFKTENNFLYDGNTNLGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEF
EKNKAYGTKAHKEFIAKFGICKLHRKSFKLL

Sequences:

>Translated_191_residues
MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQLDGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQ
IDALGLSTCLKKGLKLIKKHFKTENNFLYDGNTNLGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEF
EKNKAYGTKAHKEFIAKFGICKLHRKSFKLL
>Mature_191_residues
MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQLDGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQ
IDALGLSTCLKKGLKLIKKHFKTENNFLYDGNTNLGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEF
EKNKAYGTKAHKEFIAKFGICKLHRKSFKLL

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=176, Percent_Identity=38.0681818181818, Blast_Score=99, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 21481; Mature: 21481

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQLDGLCDSKKLSEKKREE
CCCCHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFKTENNFLYDGNTNLGINGI
HHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCH
KTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKEFIAKFGI
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
CKLHRKSFKLL
HHHHHHHHCCC
>Mature Secondary Structure
MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQLDGLCDSKKLSEKKREE
CCCCHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFKTENNFLYDGNTNLGINGI
HHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCH
KTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKEFIAKFGI
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
CKLHRKSFKLL
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA