| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
Click here to switch to the map view.
The map label for this gene is 21228628
Identifier: 21228628
GI number: 21228628
Start: 3012290
End: 3012985
Strand: Reverse
Name: 21228628
Synonym: MM_2526
Alternate gene names: NA
Gene position: 3012985-3012290 (Counterclockwise)
Preceding gene: 21228629
Following gene: 21228626
Centisome position: 73.55
GC content: 46.26
Gene sequence:
>696_bases ATGAAAAAAGTTGTAACCCTCCAGCATATTTATGGAAAAAACCGGGAAACGATGGCTGAACTCCTGAAAACCCTGGTTGA GAATGAATTGAAAGACCTCGAAGTAAAGGTTGATGTATCCATTACCCCGGAAAACTGGGCAGAATTCTCCCTTGAAGGGG AAGACGAAGAGGTATCAGCAAACCTCCTGGAGTCCAGATACGGAAGCCCTGCAAAAAAAGCCGAACCCGGAAAGATATAT ATGGGTTTTCTTCAGGCTTTTCCTGAAGATTCTTTTATTGTCAATATCGGAGTCCCTGTGCAGGTTGAAGCTGAAGAACT CAAAGCACTGGGAACCGGGAAGCCAAAACAGCTTGCTTCAAGGTTTGGCCTGATCCCTCACCTGCCTGTTGAAATAGAGG TGCTGGAGGCAAATAAAAAGATAAAAGCCCGCTTCACTAAAAAACAGCTTGACCTCTGGTGGGGCTGGAAAAAAGCAAGC ACGGACAGAGTTGTCATTAATGCTGCTACCAGATCGGAAATAAAAAGCGCTATAAAAAAGACAGGCCACGGCAGGGATAT CTACGAAATAGAACGCCTTGGTCTTCTTGAGCATGCAGTCGTATGCCGGGAAACAACAGACGGACCAGGAATTGTGGCAG CAATAGGCCCTCGCCTGAAGTCAGAGATGGGAGTTGTAATAGGGGATTCCCGTTAA
Upstream 100 bases:
>100_bases AGAAACAGAAGGGCTCCTTGAATCTTACCTGAAGGGCTCAAAGCCGGAGAATGTTTGATTCCCGCAGTACGATAGAGAAG AATGAATTGGCAGGAAAAAA
Downstream 100 bases:
>100_bases CTCTCATTAATGTATGCCTGTGAGCCTGCCTGAAAAATAGGCTCTGGGCATAAAAAGTAAATTTTTAAGAGGAATTCCCT GAAACGTTTTACGCCAGAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 231; Mature: 231
Protein sequence:
>231_residues MKKVVTLQHIYGKNRETMAELLKTLVENELKDLEVKVDVSITPENWAEFSLEGEDEEVSANLLESRYGSPAKKAEPGKIY MGFLQAFPEDSFIVNIGVPVQVEAEELKALGTGKPKQLASRFGLIPHLPVEIEVLEANKKIKARFTKKQLDLWWGWKKAS TDRVVINAATRSEIKSAIKKTGHGRDIYEIERLGLLEHAVVCRETTDGPGIVAAIGPRLKSEMGVVIGDSR
Sequences:
>Translated_231_residues MKKVVTLQHIYGKNRETMAELLKTLVENELKDLEVKVDVSITPENWAEFSLEGEDEEVSANLLESRYGSPAKKAEPGKIY MGFLQAFPEDSFIVNIGVPVQVEAEELKALGTGKPKQLASRFGLIPHLPVEIEVLEANKKIKARFTKKQLDLWWGWKKAS TDRVVINAATRSEIKSAIKKTGHGRDIYEIERLGLLEHAVVCRETTDGPGIVAAIGPRLKSEMGVVIGDSR >Mature_231_residues MKKVVTLQHIYGKNRETMAELLKTLVENELKDLEVKVDVSITPENWAEFSLEGEDEEVSANLLESRYGSPAKKAEPGKIY MGFLQAFPEDSFIVNIGVPVQVEAEELKALGTGKPKQLASRFGLIPHLPVEIEVLEANKKIKARFTKKQLDLWWGWKKAS TDRVVINAATRSEIKSAIKKTGHGRDIYEIERLGLLEHAVVCRETTDGPGIVAAIGPRLKSEMGVVIGDSR
Specific function: Unknown
COG id: COG4044
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25691; Mature: 25691
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVVTLQHIYGKNRETMAELLKTLVENELKDLEVKVDVSITPENWAEFSLEGEDEEVSA CCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCEEEEECCCCHHHHH NLLESRYGSPAKKAEPGKIYMGFLQAFPEDSFIVNIGVPVQVEAEELKALGTGKPKQLAS HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCEEECHHHHHHHCCCCHHHHHH RFGLIPHLPVEIEVLEANKKIKARFTKKQLDLWWGWKKASTDRVVINAATRSEIKSAIKK HCCCCCCCCEEEEEEECCCHHHHHHHHHHHHEEECCCCCCCCEEEEECHHHHHHHHHHHH TGHGRDIYEIERLGLLEHAVVCRETTDGPGIVAAIGPRLKSEMGVVIGDSR CCCCCCHHHHHHHHHHHHHHHEEECCCCCEEEEECCCHHHCCCCEEEECCC >Mature Secondary Structure MKKVVTLQHIYGKNRETMAELLKTLVENELKDLEVKVDVSITPENWAEFSLEGEDEEVSA CCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCEEEEECCCCHHHHH NLLESRYGSPAKKAEPGKIYMGFLQAFPEDSFIVNIGVPVQVEAEELKALGTGKPKQLAS HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCEEECHHHHHHHCCCCHHHHHH RFGLIPHLPVEIEVLEANKKIKARFTKKQLDLWWGWKKASTDRVVINAATRSEIKSAIKK HCCCCCCCCEEEEEEECCCHHHHHHHHHHHHEEECCCCCCCCEEEEECHHHHHHHHHHHH TGHGRDIYEIERLGLLEHAVVCRETTDGPGIVAAIGPRLKSEMGVVIGDSR CCCCCCHHHHHHHHHHHHHHHEEECCCCCEEEEECCCHHHCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA