| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228577
Identifier: 21228577
GI number: 21228577
Start: 2953443
End: 2953682
Strand: Reverse
Name: 21228577
Synonym: MM_2475
Alternate gene names: NA
Gene position: 2953682-2953443 (Counterclockwise)
Preceding gene: 21228578
Following gene: 21228576
Centisome position: 72.11
GC content: 45.0
Gene sequence:
>240_bases ATGCCAACAAGAACGATCAGCATAAGTGAGGAAGCCTACGAGAGACTCAAAAGCCTCAAAACTTCCGAGAAAGACAGCTT CTCGGATGTGATCCTCAAGTACTATCCCAGAAAAAGAAAATTATCAGAAGTGCTCGCAGAAATAGGCTCCAATCCCGAAC TCGCAGATGCAATCGAGAAAGCTTCCAGAGACATGAGAAAAGCAAAGATGAGGAACGTTGATCTTGATGCCGGTGCTTGA
Upstream 100 bases:
>100_bases TTTTTTAAAGAAATCCTGGTTTTTTCAATATTTCATTATCCCTTACCAAATTCTTGCTATCCGAAAAACTTCAAGTACAC ATACATACACAGATACTATT
Downstream 100 bases:
>100_bases TACTTCTTTTATTGTAGATCTCCTGAGAGGCAAAAGAGGAGCTCTTCAGAAACTGGCTGAAATGGAAGCTCAGGAATCCC CTTAAGCAAAACCGAGATTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 79; Mature: 78
Protein sequence:
>79_residues MPTRTISISEEAYERLKSLKTSEKDSFSDVILKYYPRKRKLSEVLAEIGSNPELADAIEKASRDMRKAKMRNVDLDAGA
Sequences:
>Translated_79_residues MPTRTISISEEAYERLKSLKTSEKDSFSDVILKYYPRKRKLSEVLAEIGSNPELADAIEKASRDMRKAKMRNVDLDAGA >Mature_78_residues PTRTISISEEAYERLKSLKTSEKDSFSDVILKYYPRKRKLSEVLAEIGSNPELADAIEKASRDMRKAKMRNVDLDAGA
Specific function: Unknown
COG id: COG1753
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0330 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y2475_METMA (Q8PU66)
Other databases:
- EMBL: AE008384 - RefSeq: NP_634499.1 - GeneID: 1480817 - GenomeReviews: AE008384_GR - KEGG: mma:MM_2475 - NMPDR: fig|192952.1.peg.2475 - HOGENOM: HBG542190 - OMA: AFADTIG - ProtClustDB: PRK13696 - BioCyc: MMAZ192952:MM2475-MONOMER - HAMAP: MF_00794 - InterPro: IPR003847 - ProDom: PD188822
Pfam domain/function: PF02697 DUF217
EC number: NA
Molecular weight: Translated: 8963; Mature: 8832
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTRTISISEEAYERLKSLKTSEKDSFSDVILKYYPRKRKLSEVLAEIGSNPELADAIEK CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHH ASRDMRKAKMRNVDLDAGA HHHHHHHHHHHCCCCCCCC >Mature Secondary Structure PTRTISISEEAYERLKSLKTSEKDSFSDVILKYYPRKRKLSEVLAEIGSNPELADAIEK CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHH ASRDMRKAKMRNVDLDAGA HHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12125824