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The map label for this gene is nodJ [H]

Identifier: 21228556

GI number: 21228556

Start: 2927888

End: 2928652

Strand: Reverse

Name: nodJ [H]

Synonym: MM_2454

Alternate gene names: 21228556

Gene position: 2928652-2927888 (Counterclockwise)

Preceding gene: 21228557

Following gene: 21228552

Centisome position: 71.49

GC content: 43.79

Gene sequence:

>765_bases
GTGATTCAGGGAAAAGTCATCTATGTCCTCTGGCGGCGTGAGATGATAAAGTACTTCAGGGCAAGGTCAAGGGTTGCGGG
TGCTATTGGCATGCCGGCTTTTATGCTGGTATTTCAGGGAATGGGCTTTAGAAAAGTGGAATTTCCGGGCCTGCCCGACT
CGATAGGATATTTTCAATACCTGGTGCCGGGCATTATAGGGATGACCCTTCTTTTTACGGCTGCTTATGCAGGCATGAGC
GTCATAATGGATAAGCAGTTTGGGTTTTTAAAAGAAGTAATGGTGACGCCTGCAAGCAGAATCTCTATTGTCCTCGGGAT
GATATCCGGAAGTGCAACCACTTCACTCATTCAGGCACTTATTATTATGATGATGTCGGTATTACTTGGTTTCAGGCTGC
CTCTTATTCCTGCAATTCTGTCCTCTCTGGTGATAATGGTTCTTATATCGATGATCTTTATAAATATAGGATTGATTCTG
TCATCCGTACTGAAAGACTTTCACGGGTTCAGCACGGTTATTAATTTTATTGCGTTCCCTCTGTTTCTTTTATCCGGGGC
TTTATTTCCGGTCTCAAATTTGCCAGCCCCAATCAGGATTCTGTCTTATTTTGATCCGCTGACATACGGTGTGGATGCTT
TAAGGGGAGTATTGATTGGTCATTGTGAATTCTCAATTGTTCTGGATGTATGTGTCCTTTTAACACTCTCGGTCCTGATG
ATCTGCGCCAGTGGTTATTTCTTCCAGAGGGCAGAGATGATATAA

Upstream 100 bases:

>100_bases
TTGAAGACGTTTTTCTCCGCCTGACGGGTTCGACAATAAGGGAGCAGGAAGGAAGCAGGCTGTCAGTCAGGCGTGAGCGT
ATGAGAAGGAGGATGCTCCG

Downstream 100 bases:

>100_bases
ATGTGTGCCTGTAAAGGAAGAGCCAAGTTTTGTTTTAAACCAAAATAATTCTGAACTTCTCAGGCCAGGACCCGGGGTCT
GAAGAACTGTTATAAAAAAA

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MIQGKVIYVLWRREMIKYFRARSRVAGAIGMPAFMLVFQGMGFRKVEFPGLPDSIGYFQYLVPGIIGMTLLFTAAYAGMS
VIMDKQFGFLKEVMVTPASRISIVLGMISGSATTSLIQALIIMMMSVLLGFRLPLIPAILSSLVIMVLISMIFINIGLIL
SSVLKDFHGFSTVINFIAFPLFLLSGALFPVSNLPAPIRILSYFDPLTYGVDALRGVLIGHCEFSIVLDVCVLLTLSVLM
ICASGYFFQRAEMI

Sequences:

>Translated_254_residues
MIQGKVIYVLWRREMIKYFRARSRVAGAIGMPAFMLVFQGMGFRKVEFPGLPDSIGYFQYLVPGIIGMTLLFTAAYAGMS
VIMDKQFGFLKEVMVTPASRISIVLGMISGSATTSLIQALIIMMMSVLLGFRLPLIPAILSSLVIMVLISMIFINIGLIL
SSVLKDFHGFSTVINFIAFPLFLLSGALFPVSNLPAPIRILSYFDPLTYGVDALRGVLIGHCEFSIVLDVCVLLTLSVLM
ICASGYFFQRAEMI
>Mature_254_residues
MIQGKVIYVLWRREMIKYFRARSRVAGAIGMPAFMLVFQGMGFRKVEFPGLPDSIGYFQYLVPGIIGMTLLFTAAYAGMS
VIMDKQFGFLKEVMVTPASRISIVLGMISGSATTSLIQALIIMMMSVLLGFRLPLIPAILSSLVIMVLISMIFINIGLIL
SSVLKDFHGFSTVINFIAFPLFLLSGALFPVSNLPAPIRILSYFDPLTYGVDALRGVLIGHCEFSIVLDVCVLLTLSVLM
ICASGYFFQRAEMI

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 27982; Mature: 27982

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
6.7 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
6.7 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQGKVIYVLWRREMIKYFRARSRVAGAIGMPAFMLVFQGMGFRKVEFPGLPDSIGYFQY
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCEEECCCCCCHHHHHHH
LVPGIIGMTLLFTAAYAGMSVIMDKQFGFLKEVMVTPASRISIVLGMISGSATTSLIQAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHH
IIMMMSVLLGFRLPLIPAILSSLVIMVLISMIFINIGLILSSVLKDFHGFSTVINFIAFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFLLSGALFPVSNLPAPIRILSYFDPLTYGVDALRGVLIGHCEFSIVLDVCVLLTLSVLM
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ICASGYFFQRAEMI
HHHCCHHHHHHCCC
>Mature Secondary Structure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HHHCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]