| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228527
Identifier: 21228527
GI number: 21228527
Start: 2893796
End: 2894821
Strand: Reverse
Name: 21228527
Synonym: MM_2425
Alternate gene names: NA
Gene position: 2894821-2893796 (Counterclockwise)
Preceding gene: 21228528
Following gene: 21228526
Centisome position: 70.67
GC content: 39.67
Gene sequence:
>1026_bases GTGGGTATTCTTATTGGCCTGGCTCTGGGCCTGAGAGGGAAGAAGCTGAAAATAGTAGCTTTTCTGTCCGTTCTCCCTGA TCTGGATGTTATTCCATACTCGGTATTTATTTCTGTTAGCAATAGCCTTACCCATGACATAAGAACCCAGTTTTTTTATC TTTTTGGCCACAGGGAGTTCATGCATTCAATTCTTTTTATCGCCCTGGTTACATTTTTAATCTGGATTAAGACAAGAGAC CCGATATTTACCTTTGGAGGGTTTCAGTCCATTTCATCCCATGTTTACCTGGATTATATAACGACCTGGAAAATGAGACC CTTCTATCCGTTCAGTACAGACGCATCCATAATTGGAGCTGTCTATTTTTATGACCCATTCATAAATCTTCTTCCGGTAC TGCCCCTCTTAATCATGGTTGTGATAGGTTTAAAGCAAAGAGGAATGCTGAATGGCAGGTCAAATAACTTTTATAATTTT ATTAATAAGATTGATGACAAACTTTATGCCTCCCTGATTCTCGTTTTCCTGCTCTGGCTTGTTTTTATGCCGGTTTCAAA AGCCTTTCTTATCAACCATATATCAGGGACAGAAGAAGCTCAGATAAGTTACCAGAATACCTACCCCGAATCCACAAATA AATTCCTGACTGCATACTCTTATAATTCAACCCATTACAAAATTATGAAGATCAGCTACCTTTCAGGAATCGAAAAGTGC GAGTACATTGAAAAAGTCTCGATAAACGGAAATATCCCTGATGCTCCGACCTATATTGAAAGAGCCAGTAACCTCTACAG TTCCGCTGTCCCCCAGGAAATTGACTATCCGGTTTATGAAGTCTCCAAAGACGGCGGCTTTGTAACCGTGACTCTGAGTG ATGCAAGAAACCCTTATGTCGAAAACTGGGCTTATTTTAAATCTGTTTACAGATTTATTTTTAATGAAGAAAATGGAGAA TACCAGGTTTATGCGAGTGTCCAGGGAGGAAGTGAAGAAAAACTGGGTAAAAACTGGTTCAGGTAA
Upstream 100 bases:
>100_bases ATTTTTCAAAAAGCAAATATAGCTTTAATTAATATAATTAAATAAAAACGTTTTTTTTCCAGGAACACAGTCCATGGTAA ACTCAATATCTCACCTGGGA
Downstream 100 bases:
>100_bases AACTTTTGGAATAATAATTTAACAGGCAAAACATAATTTAACAGGTCAAATATAAATTAAAAGGTCAAATTTTTCCTTTC ATAATATTTTAGATATTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 341; Mature: 340
Protein sequence:
>341_residues MGILIGLALGLRGKKLKIVAFLSVLPDLDVIPYSVFISVSNSLTHDIRTQFFYLFGHREFMHSILFIALVTFLIWIKTRD PIFTFGGFQSISSHVYLDYITTWKMRPFYPFSTDASIIGAVYFYDPFINLLPVLPLLIMVVIGLKQRGMLNGRSNNFYNF INKIDDKLYASLILVFLLWLVFMPVSKAFLINHISGTEEAQISYQNTYPESTNKFLTAYSYNSTHYKIMKISYLSGIEKC EYIEKVSINGNIPDAPTYIERASNLYSSAVPQEIDYPVYEVSKDGGFVTVTLSDARNPYVENWAYFKSVYRFIFNEENGE YQVYASVQGGSEEKLGKNWFR
Sequences:
>Translated_341_residues MGILIGLALGLRGKKLKIVAFLSVLPDLDVIPYSVFISVSNSLTHDIRTQFFYLFGHREFMHSILFIALVTFLIWIKTRD PIFTFGGFQSISSHVYLDYITTWKMRPFYPFSTDASIIGAVYFYDPFINLLPVLPLLIMVVIGLKQRGMLNGRSNNFYNF INKIDDKLYASLILVFLLWLVFMPVSKAFLINHISGTEEAQISYQNTYPESTNKFLTAYSYNSTHYKIMKISYLSGIEKC EYIEKVSINGNIPDAPTYIERASNLYSSAVPQEIDYPVYEVSKDGGFVTVTLSDARNPYVENWAYFKSVYRFIFNEENGE YQVYASVQGGSEEKLGKNWFR >Mature_340_residues GILIGLALGLRGKKLKIVAFLSVLPDLDVIPYSVFISVSNSLTHDIRTQFFYLFGHREFMHSILFIALVTFLIWIKTRDP IFTFGGFQSISSHVYLDYITTWKMRPFYPFSTDASIIGAVYFYDPFINLLPVLPLLIMVVIGLKQRGMLNGRSNNFYNFI NKIDDKLYASLILVFLLWLVFMPVSKAFLINHISGTEEAQISYQNTYPESTNKFLTAYSYNSTHYKIMKISYLSGIEKCE YIEKVSINGNIPDAPTYIERASNLYSSAVPQEIDYPVYEVSKDGGFVTVTLSDARNPYVENWAYFKSVYRFIFNEENGEY QVYASVQGGSEEKLGKNWFR
Specific function: Unknown
COG id: COG1988
COG function: function code R; Predicted membrane-bound metal-dependent hydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39222; Mature: 39091
Theoretical pI: Translated: 7.70; Mature: 7.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGILIGLALGLRGKKLKIVAFLSVLPDLDVIPYSVFISVSNSLTHDIRTQFFYLFGHREF CCEEEEEEECCCCCEEEEEEHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHEECCHHH MHSILFIALVTFLIWIKTRDPIFTFGGFQSISSHVYLDYITTWKMRPFYPFSTDASIIGA HHHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHH VYFYDPFINLLPVLPLLIMVVIGLKQRGMLNGRSNNFYNFINKIDDKLYASLILVFLLWL HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH VFMPVSKAFLINHISGTEEAQISYQNTYPESTNKFLTAYSYNSTHYKIMKISYLSGIEKC HHHHCCHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCEEEEEEEHHHHHHHHH EYIEKVSINGNIPDAPTYIERASNLYSSAVPQEIDYPVYEVSKDGGFVTVTLSDARNPYV HHHHEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEECCCCCCCH ENWAYFKSVYRFIFNEENGEYQVYASVQGGSEEKLGKNWFR HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHCCCCCC >Mature Secondary Structure GILIGLALGLRGKKLKIVAFLSVLPDLDVIPYSVFISVSNSLTHDIRTQFFYLFGHREF CEEEEEEECCCCCEEEEEEHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHEECCHHH MHSILFIALVTFLIWIKTRDPIFTFGGFQSISSHVYLDYITTWKMRPFYPFSTDASIIGA HHHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHH VYFYDPFINLLPVLPLLIMVVIGLKQRGMLNGRSNNFYNFINKIDDKLYASLILVFLLWL HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH VFMPVSKAFLINHISGTEEAQISYQNTYPESTNKFLTAYSYNSTHYKIMKISYLSGIEKC HHHHCCHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCEEEEEEEHHHHHHHHH EYIEKVSINGNIPDAPTYIERASNLYSSAVPQEIDYPVYEVSKDGGFVTVTLSDARNPYV HHHHEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEECCCCCCCH ENWAYFKSVYRFIFNEENGEYQVYASVQGGSEEKLGKNWFR HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA