| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228511
Identifier: 21228511
GI number: 21228511
Start: 2870639
End: 2871538
Strand: Direct
Name: 21228511
Synonym: MM_2409
Alternate gene names: NA
Gene position: 2870639-2871538 (Clockwise)
Preceding gene: 21228509
Following gene: 21228512
Centisome position: 70.08
GC content: 36.78
Gene sequence:
>900_bases ATGGTTAAGAACAAAATAACAATAGGAGTAATTCTTTTGACAATGCTGGTTGGCATGGCATTGATACCACCAGTGAGTGC AGTAGAGGTGCAACAGAATATTACGGAAAAAGAGAATCAAGATAATATATCTGTCCCTGATCCTTGGTTTGAAAAAGGTG ACGAGTTAAATCGGCTTAGCGGGGATGAACGTCGCGCCCTTGCTGAACAAAATGAAACGGTAAGAAAAATGATTGAGGAA GATCTAAAAGTTAAACCTGTACAGATTGAAAGCCTTAAGGATTTGGAAAATCTCCCTACTAATTATCCTGAAGATATAAA AAAGGCAGTAATAGAAAATTTTACATCAAGAAATATTAGTCAACAAACCTCAACCAAAGCAACAACGACAACAAATACGG TTAATGTTTGGATAGTTGCAGATGAAGAGTACCGGAGTACTTTCGGAAATAACTGGCAGACTCAAGCATACAACACCATC GAAAATGCTGACAACGCATTCTACAACGACCATAATATAGATTTTGTTGTAGGCAAATATTCAATATGGGATAGTAATGA CAATACAGATGATGTCGTTTTACTTCTCAATGAAGCAAAAAGTGAAACTGGATGGAATTCTAATCATCAAGGCATGGATA TGCTTGCCGTTTTCAGTGATCAGGGATTAAGTAATAGAGGTTATTCTGAGTATCTAACTGGTGCATGGATAATGCAACAT CAAATAACTTCAGGTTGGGATTGGCATGTTGCACAGCATGAAGCGTCACACAGCTATGATTGTCGAGATCATGGATATGC TGGTCCAACATGCATAATGACATACACGTTTATGATGTCGACAGATAATTGGTGCAGTAATTGCGATCAAATTATTGAAA CTAATAGAAATATTTTTTAA
Upstream 100 bases:
>100_bases CTCCACAAAATAAGCCCCTAAGAGGCAGTGATTATGTTAGCTTTTCTGTATTTAAGCTTGCCTGATTTTCGCCTCCTGGG TGCTAAACAGGAGAAAAAAT
Downstream 100 bases:
>100_bases ATCGTTTCATGCAGGATTTAATCCTACATTTATTTTTATAGTGTGCTTGGAGAATTTATTAAATGAAAGCAAGGACAAAA ATTTTAGCAGCTATTTCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 299; Mature: 299
Protein sequence:
>299_residues MVKNKITIGVILLTMLVGMALIPPVSAVEVQQNITEKENQDNISVPDPWFEKGDELNRLSGDERRALAEQNETVRKMIEE DLKVKPVQIESLKDLENLPTNYPEDIKKAVIENFTSRNISQQTSTKATTTTNTVNVWIVADEEYRSTFGNNWQTQAYNTI ENADNAFYNDHNIDFVVGKYSIWDSNDNTDDVVLLLNEAKSETGWNSNHQGMDMLAVFSDQGLSNRGYSEYLTGAWIMQH QITSGWDWHVAQHEASHSYDCRDHGYAGPTCIMTYTFMMSTDNWCSNCDQIIETNRNIF
Sequences:
>Translated_299_residues MVKNKITIGVILLTMLVGMALIPPVSAVEVQQNITEKENQDNISVPDPWFEKGDELNRLSGDERRALAEQNETVRKMIEE DLKVKPVQIESLKDLENLPTNYPEDIKKAVIENFTSRNISQQTSTKATTTTNTVNVWIVADEEYRSTFGNNWQTQAYNTI ENADNAFYNDHNIDFVVGKYSIWDSNDNTDDVVLLLNEAKSETGWNSNHQGMDMLAVFSDQGLSNRGYSEYLTGAWIMQH QITSGWDWHVAQHEASHSYDCRDHGYAGPTCIMTYTFMMSTDNWCSNCDQIIETNRNIF >Mature_299_residues MVKNKITIGVILLTMLVGMALIPPVSAVEVQQNITEKENQDNISVPDPWFEKGDELNRLSGDERRALAEQNETVRKMIEE DLKVKPVQIESLKDLENLPTNYPEDIKKAVIENFTSRNISQQTSTKATTTTNTVNVWIVADEEYRSTFGNNWQTQAYNTI ENADNAFYNDHNIDFVVGKYSIWDSNDNTDDVVLLLNEAKSETGWNSNHQGMDMLAVFSDQGLSNRGYSEYLTGAWIMQH QITSGWDWHVAQHEASHSYDCRDHGYAGPTCIMTYTFMMSTDNWCSNCDQIIETNRNIF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34128; Mature: 34128
Theoretical pI: Translated: 4.30; Mature: 4.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKNKITIGVILLTMLVGMALIPPVSAVEVQQNITEKENQDNISVPDPWFEKGDELNRLS CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHCC GDERRALAEQNETVRKMIEEDLKVKPVQIESLKDLENLPTNYPEDIKKAVIENFTSRNIS CHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC QQTSTKATTTTNTVNVWIVADEEYRSTFGNNWQTQAYNTIENADNAFYNDHNIDFVVGKY HHHCCCCEEECCEEEEEEEECHHHHHHCCCCCCHHHHHHHHCCCCCEECCCCCEEEEEEE SIWDSNDNTDDVVLLLNEAKSETGWNSNHQGMDMLAVFSDQGLSNRGYSEYLTGAWIMQH EEECCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHEEH QITSGWDWHVAQHEASHSYDCRDHGYAGPTCIMTYTFMMSTDNWCSNCDQIIETNRNIF HCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure MVKNKITIGVILLTMLVGMALIPPVSAVEVQQNITEKENQDNISVPDPWFEKGDELNRLS CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHCC GDERRALAEQNETVRKMIEEDLKVKPVQIESLKDLENLPTNYPEDIKKAVIENFTSRNIS CHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC QQTSTKATTTTNTVNVWIVADEEYRSTFGNNWQTQAYNTIENADNAFYNDHNIDFVVGKY HHHCCCCEEECCEEEEEEEECHHHHHHCCCCCCHHHHHHHHCCCCCEECCCCCEEEEEEE SIWDSNDNTDDVVLLLNEAKSETGWNSNHQGMDMLAVFSDQGLSNRGYSEYLTGAWIMQH EEECCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHEEH QITSGWDWHVAQHEASHSYDCRDHGYAGPTCIMTYTFMMSTDNWCSNCDQIIETNRNIF HCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA