| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228478
Identifier: 21228478
GI number: 21228478
Start: 2833426
End: 2834169
Strand: Reverse
Name: 21228478
Synonym: MM_2376
Alternate gene names: NA
Gene position: 2834169-2833426 (Counterclockwise)
Preceding gene: 21228479
Following gene: 21228476
Centisome position: 69.19
GC content: 47.58
Gene sequence:
>744_bases ATGTCTATTTACGTCGATCAGCGCAGGTTTACAGATAAAAATTCTATCAGGACCAACCCGGTTTCATATGACTTTGACCA GAGAAACCAGGCCTGGAGGAGTCCAGTTCAGGGTGATCCCTCTCAGGACTGCCCTGCCCGGAACACTCAGATTCGGGGCA ACCCCCTGAGTATCCAGAAATCCATTCTAGCAGATTATCCAGACTTAACCTGCTCAGGGCAGGGCTCGGATTTGAAAGTA TTCCTGGACATGGATGGAGTGCTTACTGATTTTACGGGCGCATGCGAGAAATTAAACGAACGTATGATGCTCTGGTATGC TGCAGACAGAGAGCGTTTCTGGAAACATATTACTGCTGCTGGGACCGTTTTCTGGTCGGATATGTCCTGGATGGCTGGCG GGAGAGAGCTTCACGGATTCCTTAAAAGTTCAGGCTTGCACCCCACAATTCTTTCCGCGCTCCCGAGTCCGGACAGAAAA ATTGCAATGATCAACGCCAGAAAAGGAAAAATGGAGTGGTTGAAAAAAGAACTCGGGACTCCATACGCAAATAATGCAAT TCTCTGTTTCCGCCCGGAAAAAGCTCTTCAATCAGGAAATTCCAGAATCCTCATAGATGATAACTCAAATAATACCAGTG AATGGGAAGAAGCGGGAGGGACAGCTATACTGCACAGGAACGCGGATCGTACCATCAGGTGTCTTGGCAAGATCGTAAAA GAAGGACAGGAAACCCGAATTTAA
Upstream 100 bases:
>100_bases ATAAGTTAATTATATTATTTAGAGAGAGTAAATATTTTAATTATCTTTCATATAATAAAAGGAAATTATTTTCCGCCACA CAGACTAAGGAAAGGTTGCC
Downstream 100 bases:
>100_bases TTTTATGTTCTTTACGTTCCTGAGAACCAGCCCAAAAGCTAATAATCATTAGCTGGATCATTCAGGATAAATAGCTAATT TTCGTTTTTATTATTGTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 247; Mature: 246
Protein sequence:
>247_residues MSIYVDQRRFTDKNSIRTNPVSYDFDQRNQAWRSPVQGDPSQDCPARNTQIRGNPLSIQKSILADYPDLTCSGQGSDLKV FLDMDGVLTDFTGACEKLNERMMLWYAADRERFWKHITAAGTVFWSDMSWMAGGRELHGFLKSSGLHPTILSALPSPDRK IAMINARKGKMEWLKKELGTPYANNAILCFRPEKALQSGNSRILIDDNSNNTSEWEEAGGTAILHRNADRTIRCLGKIVK EGQETRI
Sequences:
>Translated_247_residues MSIYVDQRRFTDKNSIRTNPVSYDFDQRNQAWRSPVQGDPSQDCPARNTQIRGNPLSIQKSILADYPDLTCSGQGSDLKV FLDMDGVLTDFTGACEKLNERMMLWYAADRERFWKHITAAGTVFWSDMSWMAGGRELHGFLKSSGLHPTILSALPSPDRK IAMINARKGKMEWLKKELGTPYANNAILCFRPEKALQSGNSRILIDDNSNNTSEWEEAGGTAILHRNADRTIRCLGKIVK EGQETRI >Mature_246_residues SIYVDQRRFTDKNSIRTNPVSYDFDQRNQAWRSPVQGDPSQDCPARNTQIRGNPLSIQKSILADYPDLTCSGQGSDLKVF LDMDGVLTDFTGACEKLNERMMLWYAADRERFWKHITAAGTVFWSDMSWMAGGRELHGFLKSSGLHPTILSALPSPDRKI AMINARKGKMEWLKKELGTPYANNAILCFRPEKALQSGNSRILIDDNSNNTSEWEEAGGTAILHRNADRTIRCLGKIVKE GQETRI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27903; Mature: 27772
Theoretical pI: Translated: 8.48; Mature: 8.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIYVDQRRFTDKNSIRTNPVSYDFDQRNQAWRSPVQGDPSQDCPARNTQIRGNPLSIQK CEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEECCCCHHHHH SILADYPDLTCSGQGSDLKVFLDMDGVLTDFTGACEKLNERMMLWYAADRERFWKHITAA HHHHCCCCCEECCCCCCEEEEEECCCHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHH GTVFWSDMSWMAGGRELHGFLKSSGLHPTILSALPSPDRKIAMINARKGKMEWLKKELGT CEEEECCCHHHHCCHHHHHHHHHCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCC PYANNAILCFRPEKALQSGNSRILIDDNSNNTSEWEEAGGTAILHRNADRTIRCLGKIVK CCCCCEEEEECCHHHHHCCCCEEEEECCCCCCHHHHHCCCEEEEECCCCHHHHHHHHHHH EGQETRI CCCCCCC >Mature Secondary Structure SIYVDQRRFTDKNSIRTNPVSYDFDQRNQAWRSPVQGDPSQDCPARNTQIRGNPLSIQK EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEECCCCHHHHH SILADYPDLTCSGQGSDLKVFLDMDGVLTDFTGACEKLNERMMLWYAADRERFWKHITAA HHHHCCCCCEECCCCCCEEEEEECCCHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHH GTVFWSDMSWMAGGRELHGFLKSSGLHPTILSALPSPDRKIAMINARKGKMEWLKKELGT CEEEECCCHHHHCCHHHHHHHHHCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCC PYANNAILCFRPEKALQSGNSRILIDDNSNNTSEWEEAGGTAILHRNADRTIRCLGKIVK CCCCCEEEEECCHHHHHCCCCEEEEECCCCCCHHHHHCCCEEEEECCCCHHHHHHHHHHH EGQETRI CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA