| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228404
Identifier: 21228404
GI number: 21228404
Start: 2754351
End: 2755613
Strand: Direct
Name: 21228404
Synonym: MM_2302
Alternate gene names: NA
Gene position: 2754351-2755613 (Clockwise)
Preceding gene: 21228402
Following gene: 21228405
Centisome position: 67.24
GC content: 45.53
Gene sequence:
>1263_bases ATGACGACAAACTTAAAAAAGATTCTGCTTGCTTTCGGAAACGGCGTTTCTGAGCTGAATATTCCCGAGAAAAACCTCTC CAGTATAATCCTTCCTTCTGAACCTGAAGAAAAGGATTATGAAGCTCTCTTAATCAAAAAAGCTCTCGAAAATCCCGTAA AAAGCAGGAGATTATCCGAGATTGTAAATCCGGATTCAAAAATTTCAATTATTGTGAGTGATGTCACAAGACCCACTCCT ACGGCAAAGATTCTTCCTCCCCTGCTCGAAGAGCTTTACCTCGGCGGGGCAAAAGACGAGAATATTACCATTGTATTTGC TCTCGGGCTACACCGCCAGCAGACTGAAGAAGAGTGCAGAAAGCTTCTGGGGAATGATGTTTCTCGAAATATCCGGTTTG TGCAGCACGACAGGAATAGGTGTGTTCATATAGGAGAGACTAGTTTTGGCACACCTGTCGAGGTTTTCGAAGATGCTCTG AATACAGACCTGATAATCAGTATCGGGACCGTGGAATTTCATTATTACGCAGGCTATGGAGGTGGAGGAAAGTCTATCCT TCCGGGAGTAAGTTCGGAAAAATCGGTACTTTCATTCCATAGCCATTATAGCAAACTCTTCGAAGGTGACCCTCTTCTGG GGAGAGCTGACAGCCCCGCAAGGAAGGATATCGAAGAAGCCGCAGGGATTGCAGGCCTTCGCTTTATCCTGAATGTAGTG GTCAACAGCAAAAAAGAAATCGTTGCTGCCGTTGCCGGAGACTTCATCCAGGCTCATAGGGAAGCGGCAGGATATGTAGA TTCCATGTACAAAGTAAAGGTTGAACCTGCAGATGCGGTCATTGTTTCCTGCGGAGGCTTCCCTAAAGACATCAACCTTT ACCAGGCAACAAAGGCTCTGGAAAATGCCGTCCCAGCTGTAAAAGCAGGAGGGTCCATAGTACTCGTAGCTGAATGTGCG GAAGGAATCGGAAACCAGGTATACGAGTGCTGGAATAGGGAGTGCAGGAGCCCTGATGACGCCATAGAACGCTTCAAGAA CTTCTTTGAGTTTGGAGGGCACAAGAGCGCGATAGTTGCAAAAGCTGCAAAACAGTTCAAGCTTTATATTGTTTCAAAAC TTTCCGAGGATGAAAGCATAAAAGCTTTTTTCATTCCTGCAAAAAGTGTGCAGGAAGCCCTTGAAACCATTCTTGCCGAA AACCCTGAAGCAAAAGTTCACATAATACCCGATGGAGGGTGGACTCTTCCAGTACGTAAATAA
Upstream 100 bases:
>100_bases TTTCATTTCATACATACTTTTACTATTGATTTCATACATACTTTTACTATCGTTTACCTATATGATTTTATACAATTAAT ACGAAATCACCGGCACGAAC
Downstream 100 bases:
>100_bases GGAAATAGTAAGGGAAGCCGCAATAATGAAACATACTGGTAGAAATTGAAAACTGTTAATGTCCTGGTAAAAACTGAACT GTTTATTCAACTGAAGTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 420; Mature: 419
Protein sequence:
>420_residues MTTNLKKILLAFGNGVSELNIPEKNLSSIILPSEPEEKDYEALLIKKALENPVKSRRLSEIVNPDSKISIIVSDVTRPTP TAKILPPLLEELYLGGAKDENITIVFALGLHRQQTEEECRKLLGNDVSRNIRFVQHDRNRCVHIGETSFGTPVEVFEDAL NTDLIISIGTVEFHYYAGYGGGGKSILPGVSSEKSVLSFHSHYSKLFEGDPLLGRADSPARKDIEEAAGIAGLRFILNVV VNSKKEIVAAVAGDFIQAHREAAGYVDSMYKVKVEPADAVIVSCGGFPKDINLYQATKALENAVPAVKAGGSIVLVAECA EGIGNQVYECWNRECRSPDDAIERFKNFFEFGGHKSAIVAKAAKQFKLYIVSKLSEDESIKAFFIPAKSVQEALETILAE NPEAKVHIIPDGGWTLPVRK
Sequences:
>Translated_420_residues MTTNLKKILLAFGNGVSELNIPEKNLSSIILPSEPEEKDYEALLIKKALENPVKSRRLSEIVNPDSKISIIVSDVTRPTP TAKILPPLLEELYLGGAKDENITIVFALGLHRQQTEEECRKLLGNDVSRNIRFVQHDRNRCVHIGETSFGTPVEVFEDAL NTDLIISIGTVEFHYYAGYGGGGKSILPGVSSEKSVLSFHSHYSKLFEGDPLLGRADSPARKDIEEAAGIAGLRFILNVV VNSKKEIVAAVAGDFIQAHREAAGYVDSMYKVKVEPADAVIVSCGGFPKDINLYQATKALENAVPAVKAGGSIVLVAECA EGIGNQVYECWNRECRSPDDAIERFKNFFEFGGHKSAIVAKAAKQFKLYIVSKLSEDESIKAFFIPAKSVQEALETILAE NPEAKVHIIPDGGWTLPVRK >Mature_419_residues TTNLKKILLAFGNGVSELNIPEKNLSSIILPSEPEEKDYEALLIKKALENPVKSRRLSEIVNPDSKISIIVSDVTRPTPT AKILPPLLEELYLGGAKDENITIVFALGLHRQQTEEECRKLLGNDVSRNIRFVQHDRNRCVHIGETSFGTPVEVFEDALN TDLIISIGTVEFHYYAGYGGGGKSILPGVSSEKSVLSFHSHYSKLFEGDPLLGRADSPARKDIEEAAGIAGLRFILNVVV NSKKEIVAAVAGDFIQAHREAAGYVDSMYKVKVEPADAVIVSCGGFPKDINLYQATKALENAVPAVKAGGSIVLVAECAE GIGNQVYECWNRECRSPDDAIERFKNFFEFGGHKSAIVAKAAKQFKLYIVSKLSEDESIKAFFIPAKSVQEALETILAEN PEAKVHIIPDGGWTLPVRK
Specific function: Unknown
COG id: COG3875
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45935; Mature: 45804
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: PS00591 GLYCOSYL_HYDROL_F10
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTNLKKILLAFGNGVSELNIPEKNLSSIILPSEPEEKDYEALLIKKALENPVKSRRLSE CCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCHHHHHHHHH IVNPDSKISIIVSDVTRPTPTAKILPPLLEELYLGGAKDENITIVFALGLHRQQTEEECR HHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHH KLLGNDVSRNIRFVQHDRNRCVHIGETSFGTPVEVFEDALNTDLIISIGTVEFHYYAGYG HHHCCCHHCCCEEEEECCCCEEEECCCCCCCHHHHHHHHCCCCEEEEEEEEEEEEEEEEC GGGKSILPGVSSEKSVLSFHSHYSKLFEGDPLLGRADSPARKDIEEAAGIAGLRFILNVV CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH VNSKKEIVAAVAGDFIQAHREAAGYVDSMYKVKVEPADAVIVSCGGFPKDINLYQATKAL HCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHH ENAVPAVKAGGSIVLVAECAEGIGNQVYECWNRECRSPDDAIERFKNFFEFGGHKSAIVA HHCCCHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH KAAKQFKLYIVSKLSEDESIKAFFIPAKSVQEALETILAENPEAKVHIIPDGGWTLPVRK HHHHHHEEEEEECCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCEEEEEECCCEECCCCC >Mature Secondary Structure TTNLKKILLAFGNGVSELNIPEKNLSSIILPSEPEEKDYEALLIKKALENPVKSRRLSE CCHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCHHHHHHHHH IVNPDSKISIIVSDVTRPTPTAKILPPLLEELYLGGAKDENITIVFALGLHRQQTEEECR HHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHH KLLGNDVSRNIRFVQHDRNRCVHIGETSFGTPVEVFEDALNTDLIISIGTVEFHYYAGYG HHHCCCHHCCCEEEEECCCCEEEECCCCCCCHHHHHHHHCCCCEEEEEEEEEEEEEEEEC GGGKSILPGVSSEKSVLSFHSHYSKLFEGDPLLGRADSPARKDIEEAAGIAGLRFILNVV CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH VNSKKEIVAAVAGDFIQAHREAAGYVDSMYKVKVEPADAVIVSCGGFPKDINLYQATKAL HCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHH ENAVPAVKAGGSIVLVAECAEGIGNQVYECWNRECRSPDDAIERFKNFFEFGGHKSAIVA HHCCCHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH KAAKQFKLYIVSKLSEDESIKAFFIPAKSVQEALETILAENPEAKVHIIPDGGWTLPVRK HHHHHHEEEEEECCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCEEEEEECCCEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA