| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228401
Identifier: 21228401
GI number: 21228401
Start: 2749527
End: 2750714
Strand: Reverse
Name: 21228401
Synonym: MM_2299
Alternate gene names: NA
Gene position: 2750714-2749527 (Counterclockwise)
Preceding gene: 21228403
Following gene: 21228400
Centisome position: 67.15
GC content: 45.2
Gene sequence:
>1188_bases ATGAAGATGAAAATGAAAATCAGCCTTGTAATCCATGGACCCGAAGTAATTGATTCGGGAGAAACGAAAATAGTTCTGGA AAAACTTTCCTGCCTCGGCGAAGTAAAAGCGGAGCTTGGCGGAACCATGGGAAAAACAGCCGTAATTGACGCCGGGCTTG AAGGAATCATAGATACAGGCAGGCACTTAAAGCCAAGCGTCTGCATAGAATCTTTTTTTGAAACAGCCGACCTTATTTGC CTTCTGAACCGGGGAAAAACTCTAGAAACAGGCAAAATCTTCGGAGCAAAAGTCGCTGCCCGCCTGAAAGATCCCGAAAA GAAGCCCCTGGTTCAGATTGAAAGCCCTGGCTGTTCCTGCGGAAAGCTTATTCCCCTGAATAAAAAAGCTGAAAGCTTTA TTGAAAAACTCTCCGAAACCCTCAGGGTCCCTGCAGAAAACCCCCTGATTTTCCACAACCCTGTTTCCATAGAAACCTGC GAAAAAACCGGAATAACCAGAATAATCCGCGAAATCTCAGGGGTTCTTCAGGGAGAAAATATTTTTGTAAACGGGATTGT TATCGGAAAGGCATCATCTTCAAAAATAAGGATAATCTCCGAAAAAGGCTTCATCACTGCAATCGAAGGCGGAGAAATAA AAGAACACGGTCTAGAAAAGCTCCATAATTACGAAAAAAGGGACCCTGTAGACCTTGCAGGAGCCTGGATAAAAAGCGGA GACATCAGAAGAAGCAGTCCCTCACGCCCGGACGTCCGGGAACAAAACTCCAGTGCCGTCAAATCATATTTTATTTCCGG AGACAGGGCAGGAAGTATCATACCTGGAAAAGTTGTGCTTATTGACCATGAAGCTGAGAAATCCTATGAACTCTCTGCAG GGGCTGAGCTTGTGGTTACGGTCGGGGATGACACTACAGCCATAGCAGGAGATGTCCTTTACAGGCTTGGCATACCTATC ATCGGGATCACAGACGGAGACTGCGACAATGTTACCTGCGAGCCAAAAACCTTTTCGGGATCGATTATCCTCAGGCTGGA ACCTGGAAACGATGATATCGTGGGCATGAGGATAAAGAAGGAGCTTTTAAAAGGACAAAATTCGGCTGTTTTTGAGGATC TTCTAGCTTTTAAAGAAGAGGTTCTGAAACTGGCAGAGCCTTCCATTGAGGCTGTTTTTAAATATTGA
Upstream 100 bases:
>100_bases ATACAGGAAACAGGTTATGTTTGAAGAAAAACATAAGAAGAATACCAGCTGTAATAAAGGGTCATAATAATATGTTCCTC TCAGTTAAAATCAAATGAAA
Downstream 100 bases:
>100_bases AAAACCCTGACCTGCACAGCAATATTTGATATATCGGGTCATTCCTGTCCTACTCAACGAGGAAGAGCGACCAGTCAGGT AGAGTGTTTGAGCACTCACT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 395; Mature: 395
Protein sequence:
>395_residues MKMKMKISLVIHGPEVIDSGETKIVLEKLSCLGEVKAELGGTMGKTAVIDAGLEGIIDTGRHLKPSVCIESFFETADLIC LLNRGKTLETGKIFGAKVAARLKDPEKKPLVQIESPGCSCGKLIPLNKKAESFIEKLSETLRVPAENPLIFHNPVSIETC EKTGITRIIREISGVLQGENIFVNGIVIGKASSSKIRIISEKGFITAIEGGEIKEHGLEKLHNYEKRDPVDLAGAWIKSG DIRRSSPSRPDVREQNSSAVKSYFISGDRAGSIIPGKVVLIDHEAEKSYELSAGAELVVTVGDDTTAIAGDVLYRLGIPI IGITDGDCDNVTCEPKTFSGSIILRLEPGNDDIVGMRIKKELLKGQNSAVFEDLLAFKEEVLKLAEPSIEAVFKY
Sequences:
>Translated_395_residues MKMKMKISLVIHGPEVIDSGETKIVLEKLSCLGEVKAELGGTMGKTAVIDAGLEGIIDTGRHLKPSVCIESFFETADLIC LLNRGKTLETGKIFGAKVAARLKDPEKKPLVQIESPGCSCGKLIPLNKKAESFIEKLSETLRVPAENPLIFHNPVSIETC EKTGITRIIREISGVLQGENIFVNGIVIGKASSSKIRIISEKGFITAIEGGEIKEHGLEKLHNYEKRDPVDLAGAWIKSG DIRRSSPSRPDVREQNSSAVKSYFISGDRAGSIIPGKVVLIDHEAEKSYELSAGAELVVTVGDDTTAIAGDVLYRLGIPI IGITDGDCDNVTCEPKTFSGSIILRLEPGNDDIVGMRIKKELLKGQNSAVFEDLLAFKEEVLKLAEPSIEAVFKY >Mature_395_residues MKMKMKISLVIHGPEVIDSGETKIVLEKLSCLGEVKAELGGTMGKTAVIDAGLEGIIDTGRHLKPSVCIESFFETADLIC LLNRGKTLETGKIFGAKVAARLKDPEKKPLVQIESPGCSCGKLIPLNKKAESFIEKLSETLRVPAENPLIFHNPVSIETC EKTGITRIIREISGVLQGENIFVNGIVIGKASSSKIRIISEKGFITAIEGGEIKEHGLEKLHNYEKRDPVDLAGAWIKSG DIRRSSPSRPDVREQNSSAVKSYFISGDRAGSIIPGKVVLIDHEAEKSYELSAGAELVVTVGDDTTAIAGDVLYRLGIPI IGITDGDCDNVTCEPKTFSGSIILRLEPGNDDIVGMRIKKELLKGQNSAVFEDLLAFKEEVLKLAEPSIEAVFKY
Specific function: Unknown
COG id: COG4069
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012032 [H]
Pfam domain/function: PF09890 DUF2117 [H]
EC number: NA
Molecular weight: Translated: 42753; Mature: 42753
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMKMKISLVIHGPEVIDSGETKIVLEKLSCLGEVKAELGGTMGKTAVIDAGLEGIIDTG CCEEEEEEEEEECCHHCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHCCC RHLKPSVCIESFFETADLICLLNRGKTLETGKIFGAKVAARLKDPEKKPLVQIESPGCSC CCCCHHHHHHHHHHHHCEEEEECCCCEEECCCCHHHHHHHHHCCCCCCCEEEECCCCCCC GKLIPLNKKAESFIEKLSETLRVPAENPLIFHNPVSIETCEKTGITRIIREISGVLQGEN CCEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEHHHHCCHHHHHHHHHHHCCCCE IFVNGIVIGKASSSKIRIISEKGFITAIEGGEIKEHGLEKLHNYEKRDPVDLAGAWIKSG EEEEEEEEECCCCCEEEEEECCCCEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCC DIRRSSPSRPDVREQNSSAVKSYFISGDRAGSIIPGKVVLIDHEAEKSYELSAGAELVVT CCCCCCCCCCCHHHCCHHHHHHHEECCCCCCCCCCCEEEEEECCCCCCEEECCCCEEEEE VGDDTTAIAGDVLYRLGIPIIGITDGDCDNVTCEPKTFSGSIILRLEPGNDDIVGMRIKK ECCCCHHHHHHHHHHHCCCEEEECCCCCCCEEECCCCCCCEEEEEEECCCCCEEEHHHHH ELLKGQNSAVFEDLLAFKEEVLKLAEPSIEAVFKY HHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCC >Mature Secondary Structure MKMKMKISLVIHGPEVIDSGETKIVLEKLSCLGEVKAELGGTMGKTAVIDAGLEGIIDTG CCEEEEEEEEEECCHHCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHCCC RHLKPSVCIESFFETADLICLLNRGKTLETGKIFGAKVAARLKDPEKKPLVQIESPGCSC CCCCHHHHHHHHHHHHCEEEEECCCCEEECCCCHHHHHHHHHCCCCCCCEEEECCCCCCC GKLIPLNKKAESFIEKLSETLRVPAENPLIFHNPVSIETCEKTGITRIIREISGVLQGEN CCEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEHHHHCCHHHHHHHHHHHCCCCE IFVNGIVIGKASSSKIRIISEKGFITAIEGGEIKEHGLEKLHNYEKRDPVDLAGAWIKSG EEEEEEEEECCCCCEEEEEECCCCEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCC DIRRSSPSRPDVREQNSSAVKSYFISGDRAGSIIPGKVVLIDHEAEKSYELSAGAELVVT CCCCCCCCCCCHHHCCHHHHHHHEECCCCCCCCCCCEEEEEECCCCCCEEECCCCEEEEE VGDDTTAIAGDVLYRLGIPIIGITDGDCDNVTCEPKTFSGSIILRLEPGNDDIVGMRIKK ECCCCHHHHHHHHHHHCCCEEEECCCCCCCEEECCCCCCCEEEEEEECCCCCEEEHHHHH ELLKGQNSAVFEDLLAFKEEVLKLAEPSIEAVFKY HHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]