| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228395
Identifier: 21228395
GI number: 21228395
Start: 2735284
End: 2736504
Strand: Reverse
Name: 21228395
Synonym: MM_2293
Alternate gene names: NA
Gene position: 2736504-2735284 (Counterclockwise)
Preceding gene: 21228396
Following gene: 21228394
Centisome position: 66.8
GC content: 45.78
Gene sequence:
>1221_bases ATGAGCGCGGAAGGCATCGCCGAAAATATCCCACCTGGCTACAAACAGACGGAGGTGGGGGTGATACCGGAGGATTGGAA TGATCCAAAACTCGAAGATATTGTAAAAGAGGAATCTCCAATCTGCTATGGTATCGTTCAAGTTGGCTCTTACACAGCAA ACGGTATTCCTGTGCTTGCTATCAAGAATCTTAACTCTGACTATACCACCAACATTCATCGCGCATCAGTTGAAGTAGAA CGTCCCTATCTCAGAAGCCGTGTTTATCCAGAAGATGTTCTGATTTCAGTAAAAGGAACAACAGGACGTATTGGGATTGT ACCACTTGGATTTTACGGGAACATCAGCCGTGACCTTGCCCGACTTCATCTTCGTGAAGGTATTGTTCCTAAGTTCATCT TCCAAATGCTTCAATCTAACTTGATGCAACAGCATCTAGGGGTGGCTGTTGTTGGTACAACGCGAATGGAACTTTCGATT TCTATCTTGAAAAAGGTCAGAATTCCATTCCCACCCACTAAAGCCGAACAAGAATCCATCGCCGAAGCCCTTTCCTATAC GGATGCCTTCATCGAATCCCTTGAGCAGCTCATCGCCAAGAAACGCCAGATTAAACAGGGCGCCATGCAGGAGTTGCTGA CTGGGAAGAGAAGGCTTCCGGGGTTTAGTAAGGAATGGGAAACGAAGCCTTTGGGCGATGTTGCTGAGATTACCATGGGA CAATCTCCAAGCTCGGCAAACTACAATAGCAAAGGAGAAGGGTTACCGTTAATCCAAGGAAATGCCGACATCTTTAACCG TAAAACTATCAAGAGAGTCTTTACAACCGAGATTACAAGAAGAGGCAAATGTGGGGATATTATTATGTCCGTTCGTGCAC CTGTAGGAGAAGTTTCACGGGCTGAATTCGATATCTGCCTCGGTCGTGGTGTATGTGCAATCCGTTACTCAAACAATTTC CTCTATCATACCCTAATCTCAAAAGAGTCTACTTGGGCAAAGCTATCAAAAGGCTCTACTTTTGATTCAGTGAATTCAGC AGATGTAAAGGCTTTTGACATCGAATTACCGACAGACTCTGCTGAACAAGAAGCCATCGCCACTATTCTCTCCGACATGG ATGCGGAAATCACCGCACTGGAAGAAAAGCTTGCCAAAGCCCGCCAGATCAAGCAGGGTATGATGCAGGAACTGCTTACA GGGAGGACTCGATTGGTATGA
Upstream 100 bases:
>100_bases TCGCCGAACGCTACGAAATCCCGATGCCGCAGATGACTGACCGCGTGGCTGAACTGGAAGCAAAAGTGAACCGACACTTG GAGAGGATGGGGTTTAGGCT
Downstream 100 bases:
>100_bases ACATCGGCAAGCCCGAACGAGCCACCCAGGACCGAATAATTTCTCTTTTTCACGATGAGCTTGGCTACAGCTACCTAGGG AACTGGATTGACCGTGAAGG
Product: type I restriction-modification system specificity subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 406; Mature: 405
Protein sequence:
>406_residues MSAEGIAENIPPGYKQTEVGVIPEDWNDPKLEDIVKEESPICYGIVQVGSYTANGIPVLAIKNLNSDYTTNIHRASVEVE RPYLRSRVYPEDVLISVKGTTGRIGIVPLGFYGNISRDLARLHLREGIVPKFIFQMLQSNLMQQHLGVAVVGTTRMELSI SILKKVRIPFPPTKAEQESIAEALSYTDAFIESLEQLIAKKRQIKQGAMQELLTGKRRLPGFSKEWETKPLGDVAEITMG QSPSSANYNSKGEGLPLIQGNADIFNRKTIKRVFTTEITRRGKCGDIIMSVRAPVGEVSRAEFDICLGRGVCAIRYSNNF LYHTLISKESTWAKLSKGSTFDSVNSADVKAFDIELPTDSAEQEAIATILSDMDAEITALEEKLAKARQIKQGMMQELLT GRTRLV
Sequences:
>Translated_406_residues MSAEGIAENIPPGYKQTEVGVIPEDWNDPKLEDIVKEESPICYGIVQVGSYTANGIPVLAIKNLNSDYTTNIHRASVEVE RPYLRSRVYPEDVLISVKGTTGRIGIVPLGFYGNISRDLARLHLREGIVPKFIFQMLQSNLMQQHLGVAVVGTTRMELSI SILKKVRIPFPPTKAEQESIAEALSYTDAFIESLEQLIAKKRQIKQGAMQELLTGKRRLPGFSKEWETKPLGDVAEITMG QSPSSANYNSKGEGLPLIQGNADIFNRKTIKRVFTTEITRRGKCGDIIMSVRAPVGEVSRAEFDICLGRGVCAIRYSNNF LYHTLISKESTWAKLSKGSTFDSVNSADVKAFDIELPTDSAEQEAIATILSDMDAEITALEEKLAKARQIKQGMMQELLT GRTRLV >Mature_405_residues SAEGIAENIPPGYKQTEVGVIPEDWNDPKLEDIVKEESPICYGIVQVGSYTANGIPVLAIKNLNSDYTTNIHRASVEVER PYLRSRVYPEDVLISVKGTTGRIGIVPLGFYGNISRDLARLHLREGIVPKFIFQMLQSNLMQQHLGVAVVGTTRMELSIS ILKKVRIPFPPTKAEQESIAEALSYTDAFIESLEQLIAKKRQIKQGAMQELLTGKRRLPGFSKEWETKPLGDVAEITMGQ SPSSANYNSKGEGLPLIQGNADIFNRKTIKRVFTTEITRRGKCGDIIMSVRAPVGEVSRAEFDICLGRGVCAIRYSNNFL YHTLISKESTWAKLSKGSTFDSVNSADVKAFDIELPTDSAEQEAIATILSDMDAEITALEEKLAKARQIKQGMMQELLTG RTRLV
Specific function: Unknown
COG id: COG0732
COG function: function code V; Restriction endonuclease S subunits
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJ0130 and MJ1218 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000055 [H]
Pfam domain/function: PF01420 Methylase_S [H]
EC number: NA
Molecular weight: Translated: 44969; Mature: 44838
Theoretical pI: Translated: 7.45; Mature: 7.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAEGIAENIPPGYKQTEVGVIPEDWNDPKLEDIVKEESPICYGIVQVGSYTANGIPVLA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCEEEEE IKNLNSDYTTNIHRASVEVERPYLRSRVYPEDVLISVKGTTGRIGIVPLGFYGNISRDLA EECCCCCCCCCEEEEEEEECCHHHHHCCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHH RLHLREGIVPKFIFQMLQSNLMQQHLGVAVVGTTRMELSISILKKVRIPFPPTKAEQESI HHHHHHCCHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHH AEALSYTDAFIESLEQLIAKKRQIKQGAMQELLTGKRRLPGFSKEWETKPLGDVAEITMG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCC QSPSSANYNSKGEGLPLIQGNADIFNRKTIKRVFTTEITRRGKCGDIIMSVRAPVGEVSR CCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCCHHHH AEFDICLGRGVCAIRYSNNFLYHTLISKESTWAKLSKGSTFDSVNSADVKAFDIELPTDS HHHHEEECCCEEEEEECCCEEEEEEECCCCHHHHHCCCCCCCCCCCCCEEEEEEECCCCC AEQEAIATILSDMDAEITALEEKLAKARQIKQGMMQELLTGRTRLV HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCC >Mature Secondary Structure SAEGIAENIPPGYKQTEVGVIPEDWNDPKLEDIVKEESPICYGIVQVGSYTANGIPVLA CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCEEEEE IKNLNSDYTTNIHRASVEVERPYLRSRVYPEDVLISVKGTTGRIGIVPLGFYGNISRDLA EECCCCCCCCCEEEEEEEECCHHHHHCCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHH RLHLREGIVPKFIFQMLQSNLMQQHLGVAVVGTTRMELSISILKKVRIPFPPTKAEQESI HHHHHHCCHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHH AEALSYTDAFIESLEQLIAKKRQIKQGAMQELLTGKRRLPGFSKEWETKPLGDVAEITMG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCC QSPSSANYNSKGEGLPLIQGNADIFNRKTIKRVFTTEITRRGKCGDIIMSVRAPVGEVSR CCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCCHHHH AEFDICLGRGVCAIRYSNNFLYHTLISKESTWAKLSKGSTFDSVNSADVKAFDIELPTDS HHHHEEECCCEEEEEECCCEEEEEEECCCCHHHHHCCCCCCCCCCCCCEEEEEEECCCCC AEQEAIATILSDMDAEITALEEKLAKARQIKQGMMQELLTGRTRLV HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]