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The map label for this gene is rps4p

Identifier: 21228258

GI number: 21228258

Start: 2558370

End: 2559029

Strand: Direct

Name: rps4p

Synonym: MM_2156

Alternate gene names: 21228258

Gene position: 2558370-2559029 (Clockwise)

Preceding gene: 21228257

Following gene: 21228259

Centisome position: 62.45

GC content: 50.61

Gene sequence:

>660_bases
ATGGCATATCCAGGTAAAAAAAGTAAAAGTTACGAGACTCCTAGGCACCCCTGGCAGGAAGCCAGGATGGCTGCTGAAGT
CCAGCTCGTGAAGGCATACGGCCTCAGAAACAAAAAGGAAGTCTGGAAAGCAGCAAGTATGCTCAGGATGTACAGGTCCG
AAGCAAGGAAACTTCTTGCACAGGTAGCTTCCGGAGGACAGGAAGGGGAACTTGAGGGGCACTACGCAACCCAGTCCGAA
GAAATTCTTTCCAAGCTCATCCGCTATGGCATTATAAAAGCTGACGCCAACGTTGACGATATTCTCTCTTTAAAGACCGA
AAACATCCTTGAAAGGAGGCTCCAGACCCAGGTTCTCCGCCTCGGGCTTGCAAGGACTGTTATTCAGGCACGCCAGTTCA
TTACCCATGGCCACATTGCAATTAACGGCAGAAAAGCTACAATTCCGGGAATGCTGGTCTCAAAAGAAGACGAGATGCAT
ATAGGATACTATGGAAGTTCTCCTCTTATGAGTGAGTCCCACTCTGAAAGGCCTGTCCAGGTCGCATCCTTCCTTGCAGA
CAGTGCAACAACCCTTAAGGCTGCTGCCGAGGCAAAGCAGGCAAGAGAAAGACCTCCTGAGAGAGGCGGCGGCAGGAAGA
AGAGAGGCGGGAGGAGATAA

Upstream 100 bases:

>100_bases
AGGCCTTAAGGTCAGAGGGCAGAGGACAAAATCCACAGGCCGCCGCGGGTCAACTGTCGGTGTGAGCAGGAAGAAGTAAT
TTTTCGGTTGGTGATTTGAA

Downstream 100 bases:

>100_bases
ACATGGCAGATATGAAATGGGCTGTAGCTCACATCAAATCCTCATTTAATAACACAATTATTACAGTAACAGATATCACC
GGGGCTGAAACTATTGCCAA

Product: 30S ribosomal protein S4P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MAYPGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVASGGQEGELEGHYATQSE
EILSKLIRYGIIKADANVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMH
IGYYGSSPLMSESHSERPVQVASFLADSATTLKAAAEAKQARERPPERGGGRKKRGGRR

Sequences:

>Translated_219_residues
MAYPGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVASGGQEGELEGHYATQSE
EILSKLIRYGIIKADANVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMH
IGYYGSSPLMSESHSERPVQVASFLADSATTLKAAAEAKQARERPPERGGGRKKRGGRR
>Mature_218_residues
AYPGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVASGGQEGELEGHYATQSEE
ILSKLIRYGIIKADANVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHI
GYYGSSPLMSESHSERPVQVASFLADSATTLKAAAEAKQARERPPERGGGRKKRGGRR

Specific function: With S5 and S12 plays an important role in translational accuracy

COG id: COG0522

COG function: function code J; Ribosomal protein S4 and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain

Homologues:

Organism=Homo sapiens, GI14141193, Length=161, Percent_Identity=37.2670807453416, Blast_Score=111, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17535707, Length=163, Percent_Identity=33.7423312883436, Blast_Score=102, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6325176, Length=167, Percent_Identity=37.125748502994, Blast_Score=119, Evalue=3e-28,
Organism=Saccharomyces cerevisiae, GI6319666, Length=167, Percent_Identity=36.5269461077844, Blast_Score=118, Evalue=8e-28,
Organism=Drosophila melanogaster, GI24661711, Length=167, Percent_Identity=37.125748502994, Blast_Score=115, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24661707, Length=167, Percent_Identity=37.125748502994, Blast_Score=115, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24661715, Length=137, Percent_Identity=40.1459854014599, Blast_Score=99, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS4_METMA (Q8PV18)

Other databases:

- EMBL:   AE008384
- RefSeq:   NP_634180.1
- ProteinModelPortal:   Q8PV18
- SMR:   Q8PV18
- GeneID:   1480498
- GenomeReviews:   AE008384_GR
- KEGG:   mma:MM_2156
- NMPDR:   fig|192952.1.peg.2156
- HOGENOM:   HBG588353
- OMA:   KEDEMHI
- ProtClustDB:   PRK04051
- BioCyc:   MMAZ192952:MM2156-MONOMER
- GO:   GO:0006412
- HAMAP:   MF_01306_A
- InterPro:   IPR022801
- InterPro:   IPR005710
- InterPro:   IPR022802
- InterPro:   IPR018079
- InterPro:   IPR002942
- PANTHER:   PTHR11831
- SMART:   SM00363
- TIGRFAMs:   TIGR01018

Pfam domain/function: PF01479 S4

EC number: NA

Molecular weight: Translated: 24468; Mature: 24337

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: PS00632 RIBOSOMAL_S4; PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYPGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
QVASGGQEGELEGHYATQSEEILSKLIRYGIIKADANVDDILSLKTENILERRLQTQVLR
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGSSPLMSESHSERPVQ
HHHHHHHHHHHHHHHCCCEEECCCEEECCCEEECCCCCEEEEEECCCCCCCCCCCCCHHH
VASFLADSATTLKAAAEAKQARERPPERGGGRKKRGGRR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AYPGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
QVASGGQEGELEGHYATQSEEILSKLIRYGIIKADANVDDILSLKTENILERRLQTQVLR
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGSSPLMSESHSERPVQ
HHHHHHHHHHHHHHHCCCEEECCCEEECCCEEECCCCCEEEEEECCCCCCCCCCCCCHHH
VASFLADSATTLKAAAEAKQARERPPERGGGRKKRGGRR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12125824