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The map label for this gene is rps4e [H]

Identifier: 21228238

GI number: 21228238

Start: 2544700

End: 2545407

Strand: Direct

Name: rps4e [H]

Synonym: MM_2136

Alternate gene names: 21228238

Gene position: 2544700-2545407 (Clockwise)

Preceding gene: 21228237

Following gene: 21228239

Centisome position: 62.12

GC content: 46.33

Gene sequence:

>708_bases
GTGACACACCAGAAAAGATTATCAGTTCCTAAGAGCTGGAAGGTTGGGAGAAAAGGTAACAAGTGGATCTCCACTACCCG
CCCGGGGCCTCACAGCCAGGCACGCAGTCTTCCGCTCGGACTCATAATCCGGGACGTTCTCAAACTTGTTGACAACAACA
GAGAAGGTAAAAGGATTCTCTCCGAAGGAAAAGTCCTTGTTGACGGAATTTCCAGGAAAGATCTCAGGTTCCCGGTAGGA
CTCTTTGATGTAATTACACTTCCACTCGTAAATGAAGCATACAGGATGCTCCAGGATGAAAAGGGACGTCTTGTCCTCTA
CAAGCTCAATGAAACCAATGTAAACAAGCTGTGCAGGATCAACAACAAGACAACCGTTAAAGGAGGAAAAATACAGCTTA
ACCTCAATGACGGAACCAACATCCTCGGCTCCAACGATTACGGGACAAAAGATTCCCTTATCCTTTCCATACCTGACAAG
CATGTAGTAAAACACCTGAAGTTTGAGGTAGGCAACCTTGCAATGGTTATAGGAGGCCAGCACTCGGGCGAAACCGGTAA
GATTATGGAGATCAGGGAAGTTAAGAGTTCCAGGCACAACACGGTAATGATTTCCGGGGAAACCGATTTCGAAACAATCG
AAGACTACGTAATTGTTATCGGCGAGGACAAACCTGAAATTCGGCTTGGCGGTGAGATAAGTGAGTAA

Upstream 100 bases:

>100_bases
GTCCCGAGGCCCATCAACCCCTCCAATGTTATGATCACAAAACTGGAAATGAAAGACGGGCGCAGAGCGTCAAGCATTAA
GAAGTGAGGCAGGTGATTTT

Downstream 100 bases:

>100_bases
TCCTATGCGCACCCCCATGGTTGAGAAAGTAATTGTCCATATGGGTGTTGGAGAAAGCGGTCAGCACCTTGTAAATGCCG
AGGAAATCCTCAAGACCATC

Product: 30S ribosomal protein S4e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MTHQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVG
LFDVITLPLVNEAYRMLQDEKGRLVLYKLNETNVNKLCRINNKTTVKGGKIQLNLNDGTNILGSNDYGTKDSLILSIPDK
HVVKHLKFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMISGETDFETIEDYVIVIGEDKPEIRLGGEISE

Sequences:

>Translated_235_residues
MTHQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVG
LFDVITLPLVNEAYRMLQDEKGRLVLYKLNETNVNKLCRINNKTTVKGGKIQLNLNDGTNILGSNDYGTKDSLILSIPDK
HVVKHLKFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMISGETDFETIEDYVIVIGEDKPEIRLGGEISE
>Mature_234_residues
THQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGL
FDVITLPLVNEAYRMLQDEKGRLVLYKLNETNVNKLCRINNKTTVKGGKIQLNLNDGTNILGSNDYGTKDSLILSIPDKH
VVKHLKFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMISGETDFETIEDYVIVIGEDKPEIRLGGEISE

Specific function: Unknown

COG id: COG1471

COG function: function code J; Ribosomal protein S4E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI4506727, Length=232, Percent_Identity=29.3103448275862, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI4506725, Length=232, Percent_Identity=28.448275862069, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI88703062, Length=232, Percent_Identity=27.5862068965517, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17543386, Length=224, Percent_Identity=35.2678571428571, Blast_Score=125, Evalue=2e-29,
Organism=Saccharomyces cerevisiae, GI6322605, Length=232, Percent_Identity=32.7586206896552, Blast_Score=103, Evalue=3e-23,
Organism=Saccharomyces cerevisiae, GI6321997, Length=232, Percent_Identity=32.7586206896552, Blast_Score=103, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24663672, Length=232, Percent_Identity=32.7586206896552, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24663668, Length=232, Percent_Identity=32.7586206896552, Blast_Score=108, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005824
- InterPro:   IPR000876
- InterPro:   IPR022994
- InterPro:   IPR013845
- InterPro:   IPR013843
- InterPro:   IPR018199
- InterPro:   IPR002942
- ProDom:   PD002667 [H]

Pfam domain/function: PF00900 Ribosomal_S4e; PF08071 RS4NT; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 26289; Mature: 26158

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS50889 S4 ; PS00528 RIBOSOMAL_S4E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRIL
CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCHHHHH
SEGKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLNETNVNKLCRI
HCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEE
NNKTTVKGGKIQLNLNDGTNILGSNDYGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQ
CCCEEECCCEEEEEECCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHCCCCEEEEEECC
HSGETGKIMEIREVKSSRHNTVMISGETDFETIEDYVIVIGEDKPEIRLGGEISE
CCCCCCCEEEHHHHHCCCCCEEEEECCCCHHCCCEEEEEEECCCCCEEECCCCCC
>Mature Secondary Structure 
THQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRIL
CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCHHHHH
SEGKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLNETNVNKLCRI
HCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEE
NNKTTVKGGKIQLNLNDGTNILGSNDYGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQ
CCCEEECCCEEEEEECCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHCCCCEEEEEECC
HSGETGKIMEIREVKSSRHNTVMISGETDFETIEDYVIVIGEDKPEIRLGGEISE
CCCCCCCEEEHHHHHCCCCCEEEEECCCCHHCCCEEEEEEECCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11932238 [H]