| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is cdhE1 [H]
Identifier: 21228186
GI number: 21228186
Start: 2483969
End: 2485381
Strand: Reverse
Name: cdhE1 [H]
Synonym: MM_2084
Alternate gene names: 21228186
Gene position: 2485381-2483969 (Counterclockwise)
Preceding gene: 21228187
Following gene: 21228183
Centisome position: 60.67
GC content: 46.85
Gene sequence:
>1413_bases ATGAAGATTAACAGCCCATTAGAAGCGTACAAGTACCTGCCTCAGACCAACTGTGGAGAATGTGGTCAGCCTACATGTAT GGCATTTGCCTCCACGCTGATCGATAGGTCAGGCAAGACAACAGACTGCCCTCCCCTGATTAAAGAAAAGAAGTTTGCAA AGAAACTGGCAGAACTAGACAGGCTCCTTGCTCCTGAAATTCGCCAGGTTACTATTGGTGTTGGCGAAAGAGCAGCCAAT ATTGGTGGAGACGATGTACTGTACCGCCACAAACTGACATTCTTTAACAAGACAAAGATGTTCTTCGATGTGGCAGACAA CATGGACGAAGCTGCCATTGTTGAAAGAGTGAAGAAGATCAGTGATTACAAGAAGTTCTATGTAGGACGTAACCTGCTTC TCGATGGTGTGGCAATAAGAGCAGCATCCAATGATCCTGCAAAGTTTGCAACAGCTGTCAAGAAAGTTATAGAAAACACA GAACTGCCTGTAATTCTATGTTCTTTCAATCCTGCAGTCCTGAAGGCAGGACTTGAGGTAGCAAAGGGTAAAAACCCGCT GCTGTATGCTGCAAACAAGGACAACTGGAAAGAGGTAGGAGAACTAGCACTCGAGTATAACGTGCCTGTGGTTGTTTCAG CGTTTAATGACCTTGACGGCCTGAAGACTCTTGCAAAGACATTTGCAGAGGCTGGAATTAAGGACATTGTGCTTGACCCG GGAACTTACCCAACCGGGAAAGGTCTGAAGGATACTTTCACAAACTTCCTGAAGATCAGGAGAGCAGGCATTATGGGAGA CACCGAGATCGCGTATCCGATCATGGCTATGCCGCTTACTGCCTGGATGGCGGGAATTGCTGACCCTGTCAGTGCATCAT ACTGGGAAACGGTTCTTTCATCAATCTTTACTATAAGGTACGGAGACATTATGCTTCTCCACAGCATGGAGCCATATGCC ACCATGCCAGAAGTACACCTGGCAGAGACAATATACACTGACCCCAGGTCTCCTGTTGCCGTAGACTCAAAGATGTATAA GGTAGGAAACCCAACAGCAGATTCACCTGTACTCTTTACCACAAACTTCGCCCTTACTTACTACACAGTAGAGAGCGACC TTGCATCAAACGGAATAGACTGCTGGCTGCTTGCAGTTAACACCGATGGTATTGGTGTGGAAGCAGCGGCTGCAGGTGGA CAGCTGACAGCTGATAAGGTGAAGGATGCATTTGAGAAGTCAGGATTTGACCTCAAGAGCGATGTTACCCATAACAGTGT AGTTATTCCGGGTCTTGCTGCCCGTCTACAGGGTGATATTGAGGACAAACTCAATGTAAAAGTTATGGTTGGTCCAATGG ACTCAGGAAGGCTACCAGGCTGGATGGAGAAGAACTGGCCACCAAAGAAATAA
Upstream 100 bases:
>100_bases ATCGGTTGCTGTCCTGAAGCAGATTACCCAGACGCTATTCGGTACCATAGACACAGAGCAGGTGGATATTGCAAACTGGA TCGGAGCGGAGGTGTGAAAA
Downstream 100 bases:
>100_bases AATAAAGTGAAAAAATTTGAATATTAATATTCCGTGTCAAAAAGACACGGAATAAAGTTTATTGCGATTTTTATAGAGGC AATTGTCTACTTACCGGATA
Product: acetyl-CoA decarbonylase/synthase complex subunit gamma
Products: CO2; AH2
Alternate protein names: ACDS complex subunit gamma 1; ACDS complex methyltransferase 1; Corrinoid/iron-sulfur component large subunit 1 [H]
Number of amino acids: Translated: 470; Mature: 470
Protein sequence:
>470_residues MKINSPLEAYKYLPQTNCGECGQPTCMAFASTLIDRSGKTTDCPPLIKEKKFAKKLAELDRLLAPEIRQVTIGVGERAAN IGGDDVLYRHKLTFFNKTKMFFDVADNMDEAAIVERVKKISDYKKFYVGRNLLLDGVAIRAASNDPAKFATAVKKVIENT ELPVILCSFNPAVLKAGLEVAKGKNPLLYAANKDNWKEVGELALEYNVPVVVSAFNDLDGLKTLAKTFAEAGIKDIVLDP GTYPTGKGLKDTFTNFLKIRRAGIMGDTEIAYPIMAMPLTAWMAGIADPVSASYWETVLSSIFTIRYGDIMLLHSMEPYA TMPEVHLAETIYTDPRSPVAVDSKMYKVGNPTADSPVLFTTNFALTYYTVESDLASNGIDCWLLAVNTDGIGVEAAAAGG QLTADKVKDAFEKSGFDLKSDVTHNSVVIPGLAARLQGDIEDKLNVKVMVGPMDSGRLPGWMEKNWPPKK
Sequences:
>Translated_470_residues MKINSPLEAYKYLPQTNCGECGQPTCMAFASTLIDRSGKTTDCPPLIKEKKFAKKLAELDRLLAPEIRQVTIGVGERAAN IGGDDVLYRHKLTFFNKTKMFFDVADNMDEAAIVERVKKISDYKKFYVGRNLLLDGVAIRAASNDPAKFATAVKKVIENT ELPVILCSFNPAVLKAGLEVAKGKNPLLYAANKDNWKEVGELALEYNVPVVVSAFNDLDGLKTLAKTFAEAGIKDIVLDP GTYPTGKGLKDTFTNFLKIRRAGIMGDTEIAYPIMAMPLTAWMAGIADPVSASYWETVLSSIFTIRYGDIMLLHSMEPYA TMPEVHLAETIYTDPRSPVAVDSKMYKVGNPTADSPVLFTTNFALTYYTVESDLASNGIDCWLLAVNTDGIGVEAAAAGG QLTADKVKDAFEKSGFDLKSDVTHNSVVIPGLAARLQGDIEDKLNVKVMVGPMDSGRLPGWMEKNWPPKK >Mature_470_residues MKINSPLEAYKYLPQTNCGECGQPTCMAFASTLIDRSGKTTDCPPLIKEKKFAKKLAELDRLLAPEIRQVTIGVGERAAN IGGDDVLYRHKLTFFNKTKMFFDVADNMDEAAIVERVKKISDYKKFYVGRNLLLDGVAIRAASNDPAKFATAVKKVIENT ELPVILCSFNPAVLKAGLEVAKGKNPLLYAANKDNWKEVGELALEYNVPVVVSAFNDLDGLKTLAKTFAEAGIKDIVLDP GTYPTGKGLKDTFTNFLKIRRAGIMGDTEIAYPIMAMPLTAWMAGIADPVSASYWETVLSSIFTIRYGDIMLLHSMEPYA TMPEVHLAETIYTDPRSPVAVDSKMYKVGNPTADSPVLFTTNFALTYYTVESDLASNGIDCWLLAVNTDGIGVEAAAAGG QLTADKVKDAFEKSGFDLKSDVTHNSVVIPGLAARLQGDIEDKLNVKVMVGPMDSGRLPGWMEKNWPPKK
Specific function: Part of a complex that catalyzes the reversible cleavage of acetyl-CoA, allowing growth on acetate as sole source of carbon and energy [H]
COG id: COG1456
COG function: function code C; CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016041 - InterPro: IPR016218 - InterPro: IPR011005 - InterPro: IPR007202 - InterPro: IPR000489 [H]
Pfam domain/function: PF03599 CdhD; PF04060 FeS [H]
EC number: 1.2.99.2
Molecular weight: Translated: 51349; Mature: 51349
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKINSPLEAYKYLPQTNCGECGQPTCMAFASTLIDRSGKTTDCPPLIKEKKFAKKLAELD CCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH RLLAPEIRQVTIGVGERAANIGGDDVLYRHKLTFFNKTKMFFDVADNMDEAAIVERVKKI HHHCCCHHEEEEECCCHHCCCCCCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHHHHH SDYKKFYVGRNLLLDGVAIRAASNDPAKFATAVKKVIENTELPVILCSFNPAVLKAGLEV HHHHHHHHCCHHEECCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHH AKGKNPLLYAANKDNWKEVGELALEYNVPVVVSAFNDLDGLKTLAKTFAEAGIKDIVLDP HCCCCCEEEECCCCCHHHHHHHHEEECCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECC GTYPTGKGLKDTFTNFLKIRRAGIMGDTEIAYPIMAMPLTAWMAGIADPVSASYWETVLS CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH SIFTIRYGDIMLLHSMEPYATMPEVHLAETIYTDPRSPVAVDSKMYKVGNPTADSPVLFT HHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCEEECCEEEECCCCCCCCCEEEE TNFALTYYTVESDLASNGIDCWLLAVNTDGIGVEAAAAGGQLTADKVKDAFEKSGFDLKS EEEEEEEEEEEHHHHCCCCEEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCC DVTHNSVVIPGLAARLQGDIEDKLNVKVMVGPMDSGRLPGWMEKNWPPKK CCCCCCEECCCHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKINSPLEAYKYLPQTNCGECGQPTCMAFASTLIDRSGKTTDCPPLIKEKKFAKKLAELD CCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH RLLAPEIRQVTIGVGERAANIGGDDVLYRHKLTFFNKTKMFFDVADNMDEAAIVERVKKI HHHCCCHHEEEEECCCHHCCCCCCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHHHHH SDYKKFYVGRNLLLDGVAIRAASNDPAKFATAVKKVIENTELPVILCSFNPAVLKAGLEV HHHHHHHHCCHHEECCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHH AKGKNPLLYAANKDNWKEVGELALEYNVPVVVSAFNDLDGLKTLAKTFAEAGIKDIVLDP HCCCCCEEEECCCCCHHHHHHHHEEECCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECC GTYPTGKGLKDTFTNFLKIRRAGIMGDTEIAYPIMAMPLTAWMAGIADPVSASYWETVLS CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH SIFTIRYGDIMLLHSMEPYATMPEVHLAETIYTDPRSPVAVDSKMYKVGNPTADSPVLFT HHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCEEECCEEEECCCCCCCCCEEEE TNFALTYYTVESDLASNGIDCWLLAVNTDGIGVEAAAAGGQLTADKVKDAFEKSGFDLKS EEEEEEEEEEEHHHHCCCCEEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCC DVTHNSVVIPGLAARLQGDIEDKLNVKVMVGPMDSGRLPGWMEKNWPPKK CCCCCCEECCCHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: CO; H2O; A
Specific reaction: CO + H2O + A = CO2 + AH2
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12125824 [H]