BacMap

Definition	Methanosarcina mazei Go1 chromosome, complete genome.
Accession	NC_003901
Length	4,096,345

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The map label for this gene is fbpC1 [H]

Identifier: 21228183

GI number: 21228183

Start: 2481066

End: 2481719

Strand: Reverse

Name: fbpC1 [H]

Synonym: MM_2081

Alternate gene names: 21228183

Gene position: 2481719-2481066 (Counterclockwise)

Preceding gene: 21228186

Following gene: 21228182

Centisome position: 60.58

GC content: 43.88

Gene sequence:

>654_bases
ATGCAGGATGAGATAATAAGGTATGAAAGTGCCGGCATAAGCTTCGGAAGAAAAAAAGTTCTTTCCGATTTTTCTCTTTG
CATTCGCAGAGGAAAAAAGGTCCTTATGAAAGGGAAATCAGGAACCGGCAAATCAACCCTGATAAAAATACTTATGGGAT
TTGAGAAACTGTCCGAAGGCTCGGTTTATTACCGAGGTAAGCCCCTGAGCCCTCAGGTAGCCTGGCAGGTCAGAAAAGAG
GTAGCCTATGTCTCCCAGGACACGGACCTCGGGGAGGGACCTGTAAAAACCCTGCTTGAAGAAGTTAATTCTTACAGGCC
CAACCGGGAAAAGATGAAACCTGAAAAACTGCATATGTTTATGAATGAGCTCGAGCTGGAAAAAGATATACTCGACAAAA
ACTTTGAGAACCTTTCAGGGGGAGAAAAGCAGAGGATAGGGATTTTAATAGCTCTGCTGCTTGAAAGAGATATTTTTCTT
CTGGATGAAGCAACCTCGGCTCTTGACTCCGGGCTTAAGAAAAAAGTTGCCGACAGCTTCCTTAAACAAGCGGGCTGGAC
GCTTTTCATAGTATCTCATGACCGGGAATGGGAAAGTAAGGAGGTAGAAATTGTGGAAATAGGGAAAAACGGAACTGATC
ATACTAATAGCTGA

Upstream 100 bases:

>100_bases
AAACCTGTTTTAAAAACGTGGAGAAAAGCGGACGGTATAAACAGAATAACATATTGGAGATGTCTTTATAGATATAATAG
AATAAGAATCAGGGTAGAAA

Downstream 100 bases:

>100_bases
AATAGAACCAGTTCAGAGAACCAGTTTAGAAAATGCAGTTTCTCTCGTGAATGCACGCAGTTTGAGCCTTAAAAAGAAAA
GTAATGATAGAACAGGAAAG

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MQDEIIRYESAGISFGRKKVLSDFSLCIRRGKKVLMKGKSGTGKSTLIKILMGFEKLSEGSVYYRGKPLSPQVAWQVRKE
VAYVSQDTDLGEGPVKTLLEEVNSYRPNREKMKPEKLHMFMNELELEKDILDKNFENLSGGEKQRIGILIALLLERDIFL
LDEATSALDSGLKKKVADSFLKQAGWTLFIVSHDREWESKEVEIVEIGKNGTDHTNS

Sequences:

>Translated_217_residues
MQDEIIRYESAGISFGRKKVLSDFSLCIRRGKKVLMKGKSGTGKSTLIKILMGFEKLSEGSVYYRGKPLSPQVAWQVRKE
VAYVSQDTDLGEGPVKTLLEEVNSYRPNREKMKPEKLHMFMNELELEKDILDKNFENLSGGEKQRIGILIALLLERDIFL
LDEATSALDSGLKKKVADSFLKQAGWTLFIVSHDREWESKEVEIVEIGKNGTDHTNS
>Mature_217_residues
MQDEIIRYESAGISFGRKKVLSDFSLCIRRGKKVLMKGKSGTGKSTLIKILMGFEKLSEGSVYYRGKPLSPQVAWQVRKE
VAYVSQDTDLGEGPVKTLLEEVNSYRPNREKMKPEKLHMFMNELELEKDILDKNFENLSGGEKQRIGILIALLLERDIFL
LDEATSALDSGLKKKVADSFLKQAGWTLFIVSHDREWESKEVEIVEIGKNGTDHTNS

Specific function: Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system [H]

COG id: COG4608

COG function: function code E; ABC-type oligopeptide transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9961252, Length=201, Percent_Identity=32.3383084577114, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI4505771, Length=201, Percent_Identity=32.3383084577114, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI42741659, Length=201, Percent_Identity=32.3383084577114, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI156105685, Length=187, Percent_Identity=32.0855614973262, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI42490749, Length=163, Percent_Identity=33.7423312883436, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI108773784, Length=193, Percent_Identity=30.0518134715026, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI108773782, Length=193, Percent_Identity=30.0518134715026, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI148612844, Length=208, Percent_Identity=32.6923076923077, Blast_Score=73, Evalue=1e-13,
Organism=Homo sapiens, GI255708477, Length=208, Percent_Identity=32.6923076923077, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI9961250, Length=208, Percent_Identity=31.7307692307692, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI89111135, Length=212, Percent_Identity=28.3018867924528, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI66529005, Length=182, Percent_Identity=29.1208791208791, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1789891, Length=206, Percent_Identity=31.0679611650485, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786698, Length=195, Percent_Identity=29.7435897435897, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788761, Length=201, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1787143, Length=194, Percent_Identity=31.9587628865979, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787712, Length=213, Percent_Identity=30.5164319248826, Blast_Score=80, Evalue=7e-17,
Organism=Escherichia coli, GI1789672, Length=200, Percent_Identity=29.5, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787500, Length=188, Percent_Identity=28.7234042553192, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789962, Length=206, Percent_Identity=30.5825242718447, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87081709, Length=189, Percent_Identity=30.1587301587302, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786703, Length=191, Percent_Identity=32.4607329842932, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787029, Length=204, Percent_Identity=31.3725490196078, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788165, Length=195, Percent_Identity=28.7179487179487, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1786253, Length=188, Percent_Identity=29.2553191489362, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1786654, Length=195, Percent_Identity=30.2564102564103, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786398, Length=204, Percent_Identity=28.921568627451, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI87081791, Length=190, Percent_Identity=30.5263157894737, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788450, Length=197, Percent_Identity=24.8730964467005, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790739, Length=216, Percent_Identity=25.9259259259259, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788540, Length=194, Percent_Identity=27.8350515463918, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787089, Length=215, Percent_Identity=27.906976744186, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790467, Length=197, Percent_Identity=28.9340101522843, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1788506, Length=186, Percent_Identity=28.494623655914, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787758, Length=222, Percent_Identity=26.1261261261261, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1787972, Length=201, Percent_Identity=32.3383084577114, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1789032, Length=214, Percent_Identity=30.3738317757009, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787105, Length=200, Percent_Identity=31, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788225, Length=197, Percent_Identity=30.4568527918782, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786872, Length=194, Percent_Identity=30.4123711340206, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1786345, Length=192, Percent_Identity=30.7291666666667, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1786563, Length=189, Percent_Identity=30.1587301587302, Blast_Score=63, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=207, Percent_Identity=32.3671497584541, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17541710, Length=205, Percent_Identity=30.7317073170732, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17533971, Length=179, Percent_Identity=32.9608938547486, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI115534520, Length=216, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17567265, Length=198, Percent_Identity=30.8080808080808, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71984940, Length=185, Percent_Identity=34.0540540540541, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71992285, Length=164, Percent_Identity=31.7073170731707, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71992290, Length=203, Percent_Identity=32.0197044334975, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI25146777, Length=182, Percent_Identity=30.7692307692308, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=182, Percent_Identity=32.967032967033, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17565938, Length=196, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17567269, Length=176, Percent_Identity=31.25, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17551702, Length=180, Percent_Identity=28.8888888888889, Blast_Score=70, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17551700, Length=178, Percent_Identity=28.6516853932584, Blast_Score=70, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI193211017, Length=209, Percent_Identity=29.6650717703349, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=209, Percent_Identity=29.6650717703349, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI193211015, Length=209, Percent_Identity=29.6650717703349, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17543740, Length=214, Percent_Identity=27.1028037383178, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115535101, Length=203, Percent_Identity=28.0788177339901, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17569143, Length=183, Percent_Identity=30.6010928961749, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17555800, Length=191, Percent_Identity=29.3193717277487, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=186, Percent_Identity=29.0322580645161, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71988343, Length=202, Percent_Identity=26.2376237623762, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193209708, Length=189, Percent_Identity=31.2169312169312, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI212646699, Length=200, Percent_Identity=27.5, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=210, Percent_Identity=26.1904761904762, Blast_Score=77, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6324985, Length=219, Percent_Identity=24.2009132420091, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6320339, Length=164, Percent_Identity=28.0487804878049, Blast_Score=65, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6323959, Length=201, Percent_Identity=29.3532338308458, Blast_Score=65, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6321720, Length=212, Percent_Identity=24.5283018867925, Blast_Score=65, Evalue=9e-12,
Organism=Drosophila melanogaster, GI281363262, Length=216, Percent_Identity=29.6296296296296, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24653245, Length=218, Percent_Identity=30.2752293577982, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI85726357, Length=202, Percent_Identity=32.6732673267327, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24659289, Length=183, Percent_Identity=31.6939890710383, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI17136662, Length=203, Percent_Identity=32.512315270936, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21357907, Length=196, Percent_Identity=31.1224489795918, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI85816269, Length=160, Percent_Identity=35, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24580553, Length=160, Percent_Identity=35, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI85724864, Length=160, Percent_Identity=35, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24580555, Length=160, Percent_Identity=35, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24650855, Length=206, Percent_Identity=24.7572815533981, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24650853, Length=206, Percent_Identity=24.7572815533981, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI23397593, Length=191, Percent_Identity=29.8429319371728, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281362751, Length=206, Percent_Identity=24.7572815533981, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015853
- InterPro:   IPR003593
- InterPro:   IPR008995
- InterPro:   IPR013611 [H]

Pfam domain/function: PF00005 ABC_tran; PF08402 TOBE_2 [H]

EC number: =3.6.3.30 [H]

Molecular weight: Translated: 24615; Mature: 24615

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDEIIRYESAGISFGRKKVLSDFSLCIRRGKKVLMKGKSGTGKSTLIKILMGFEKLSEG
CCCCCEEHHCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
SVYYRGKPLSPQVAWQVRKEVAYVSQDTDLGEGPVKTLLEEVNSYRPNREKMKPEKLHMF
CEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHCCHHHHHHH
MNELELEKDILDKNFENLSGGEKQRIGILIALLLERDIFLLDEATSALDSGLKKKVADSF
HHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LKQAGWTLFIVSHDREWESKEVEIVEIGKNGTDHTNS
HHHCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MQDEIIRYESAGISFGRKKVLSDFSLCIRRGKKVLMKGKSGTGKSTLIKILMGFEKLSEG
CCCCCEEHHCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
SVYYRGKPLSPQVAWQVRKEVAYVSQDTDLGEGPVKTLLEEVNSYRPNREKMKPEKLHMF
CEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHCCHHHHHHH
MNELELEKDILDKNFENLSGGEKQRIGILIALLLERDIFLLDEATSALDSGLKKKVADSF
HHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LKQAGWTLFIVSHDREWESKEVEIVEIGKNGTDHTNS
HHHCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA