| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228180
Identifier: 21228180
GI number: 21228180
Start: 2478733
End: 2479170
Strand: Direct
Name: 21228180
Synonym: MM_2078
Alternate gene names: NA
Gene position: 2478733-2479170 (Clockwise)
Preceding gene: 21228177
Following gene: 21228181
Centisome position: 60.51
GC content: 40.41
Gene sequence:
>438_bases ATGAGTGCAAACGCAGAAAGTTCGGAAACCTTTGTAGACTCAGCACAGGGTTTTGTGAGAAATCCTCTTAGGAAGGGAGG CAGCGCAATGAAAGAATACTGTAATATCTGTGGTCGAGAACTGCTTGAAGATGTGCTAGTAGTTGATACCAGTCTCGATA TGAAACCGATTAAATTTAAGGACGTTCAGGGAGATAAATTTGATCTGATATGCATTGAATGTGCAATTGATTCGGTTGAA AATCCACCTTTTGTATGCACAAGGTGCGGACAGCCAATTGAATTTAATGAAAAATTCTATGTGGTCAGGGAAGCGACAAC AAAACCAGGCGGACCGAAAGTAGATTTCAAAGAGACATGCATTGGAGATAAATATATCTGCCGCACATGTTTCGATGAAA CGATGAACCCCGAATATGATGAAGAGAAAGAAGTCTAA
Upstream 100 bases:
>100_bases GTGAAGGATTCGGAATAATAGGTGCGCACTGAGTCTGAGTAGAAATCCAGGAAATGGATCGGCTCTATATAAGGAAAACA GGCAAAGAATGGGGAATTTG
Downstream 100 bases:
>100_bases AAAATATTTGATATAATCCCTGCGGTGGAGTACTATGCTCTACCCATAATTTTTTGATGGCTGAATTTCTCAGCCTGTTA TCTTTTGTTTCTTTGCTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MSANAESSETFVDSAQGFVRNPLRKGGSAMKEYCNICGRELLEDVLVVDTSLDMKPIKFKDVQGDKFDLICIECAIDSVE NPPFVCTRCGQPIEFNEKFYVVREATTKPGGPKVDFKETCIGDKYICRTCFDETMNPEYDEEKEV
Sequences:
>Translated_145_residues MSANAESSETFVDSAQGFVRNPLRKGGSAMKEYCNICGRELLEDVLVVDTSLDMKPIKFKDVQGDKFDLICIECAIDSVE NPPFVCTRCGQPIEFNEKFYVVREATTKPGGPKVDFKETCIGDKYICRTCFDETMNPEYDEEKEV >Mature_144_residues SANAESSETFVDSAQGFVRNPLRKGGSAMKEYCNICGRELLEDVLVVDTSLDMKPIKFKDVQGDKFDLICIECAIDSVEN PPFVCTRCGQPIEFNEKFYVVREATTKPGGPKVDFKETCIGDKYICRTCFDETMNPEYDEEKEV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16349; Mature: 16217
Theoretical pI: Translated: 4.28; Mature: 4.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 9.0 %Cys+Met (Translated Protein) 6.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 8.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSANAESSETFVDSAQGFVRNPLRKGGSAMKEYCNICGRELLEDVLVVDTSLDMKPIKFK CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE DVQGDKFDLICIECAIDSVENPPFVCTRCGQPIEFNEKFYVVREATTKPGGPKVDFKETC CCCCCCEEEEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHH IGDKYICRTCFDETMNPEYDEEKEV CCCHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SANAESSETFVDSAQGFVRNPLRKGGSAMKEYCNICGRELLEDVLVVDTSLDMKPIKFK CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE DVQGDKFDLICIECAIDSVENPPFVCTRCGQPIEFNEKFYVVREATTKPGGPKVDFKETC CCCCCCEEEEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHH IGDKYICRTCFDETMNPEYDEEKEV CCCHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA