| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228102
Identifier: 21228102
GI number: 21228102
Start: 2382499
End: 2384019
Strand: Reverse
Name: 21228102
Synonym: MM_2000
Alternate gene names: NA
Gene position: 2384019-2382499 (Counterclockwise)
Preceding gene: 21228103
Following gene: 21228101
Centisome position: 58.2
GC content: 44.71
Gene sequence:
>1521_bases ATGAAAAAAAGCAGTATAGCATTGATACTATTATTTGCATTTATCTTATTGACAGTTTCAGGATGCATATCTTCCGATAT AATGTCTTCAGGTAATGTGTCTTCTGACAGCACATCTCCGGATGAAGGCGAAGGAAATGCAGGGGAAAACTCACGCAATG TACTGAATCAGATAGATACGGCATCTTATGAAAAATCTTCGCCTTATCTTTACTGGGAGTATGAGCTTGGGGACATAATT CCGGAAAACATAAGTGAAGGACGGGGGAACACTCAGGACTGTGTAAGGTTTACCACAGACGGAAAATATCTAGCTGCAGG GACAGGAAAAGACCTCACTGTTCTTGATGTGGCAGGTAAAAATGTTCTCTGGAAAAAGACTCTTAAAGGAAATATTTCAG ACCTTTCTTTTTCAATAGACGGAAAGTACCTCATTGCTGGAGAGAGAAGCGCTGACGGCTGCATATATTCCTTTGATGCC AGCACTGGTGAAGAGATACACCGTTACAGGACTGCAGATGACCTGGGGACAGACGAGAACTACAGAAACCAGCCCTGCAT ATACAAAATAAAGACTTCTGATGATGCCGTGTATATTGCAGCAGGGAGATACTGGAAAGATTCCGGATATGAGCTGGCTT CAAGGGTTTACAGGTTCAGTCCTGATGGCAATCTGTCCTGGAAACTTCCGGCAGCAGAAAATTACCCCAGAAGTGTAAAC TGGATAGATTCAAGCCTGGACGGAAAAAATGTTGTTTTTTCAACGGGAGACTGGACAAATTCCCTTGAAATAGGTGCGGT AATTTACTCTGTGGATGAAAGAGGGAGTTTACGCTGGAAATACGAAATCCCGCCTCTAAGGCCTTATTTTGTCTCTGCAG CAGTCTGGCACGGGCTTGATATTTCGGATGACGGTTCCATAATAACTGCTTTTACAGGGGACGGAAGAAAATACCTGTTT TACGACTCCGAGATGAAAAAACCTGGAGACGGAAAATCCGAATGGCACTCCGCAAAATATCAGTCCAATGTGACAGCCCC GGAAGAGCTTGAAGGCAGCGTCATCTACGCCTATGGCGAAAACGCGAAAATCGCATCTGAAGATGAAATACTCTACCTTA CAGGTGCCACACTTCCTGCATATTATCCCGGAAACGTCCCTATGGCATACCCACTTGAAAACTCACTCGTATCATGCGAT GCCGAAACAGGAGAGACTTCCTGGACATACAGCCTCGGAGGACGCTGTGCAGGAATTATTTACTCTCCCGATGAGAGGTT CTTTGCCCTGCCAGTCAGAAAAGATACCTCATCAGGCAATACTCAGATCCATGGAATCCATGTATTCGATTCCCGGAAAC CCGGAAATGGGAACTCAAAACTGCTCTGGACTTTCAAGACCGAAGGAGTTGTTGCAGATGCTGCAATTTCTTCAGACTGT ACCGTAGCTGCGGTTGAACTTCCTCTAAAACTCAAAAACGGGGATGTAACCGGAAAACACAGGTTAATAATTGTCAGGTG A
Upstream 100 bases:
>100_bases CGAACCTGTTGAAGATTTCAGACCTGAAAATCCACGGAAAAGCGTAATCAGTCAAAATAACCTGAAAACCAGATAGCCTG AAAACCAGAGGGATCTGAAA
Downstream 100 bases:
>100_bases GAGAATGAGATGGAAATATTTGGTAGTCCTGCTTATTGTGATTTTACTGGCTTCGGGATGTGCTGAAAAAAGCCAGGGGC CTGGAGCCAGCGCAGCTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: Pyrrolo-Quinoline Quinone
Number of amino acids: Translated: 506; Mature: 506
Protein sequence:
>506_residues MKKSSIALILLFAFILLTVSGCISSDIMSSGNVSSDSTSPDEGEGNAGENSRNVLNQIDTASYEKSSPYLYWEYELGDII PENISEGRGNTQDCVRFTTDGKYLAAGTGKDLTVLDVAGKNVLWKKTLKGNISDLSFSIDGKYLIAGERSADGCIYSFDA STGEEIHRYRTADDLGTDENYRNQPCIYKIKTSDDAVYIAAGRYWKDSGYELASRVYRFSPDGNLSWKLPAAENYPRSVN WIDSSLDGKNVVFSTGDWTNSLEIGAVIYSVDERGSLRWKYEIPPLRPYFVSAAVWHGLDISDDGSIITAFTGDGRKYLF YDSEMKKPGDGKSEWHSAKYQSNVTAPEELEGSVIYAYGENAKIASEDEILYLTGATLPAYYPGNVPMAYPLENSLVSCD AETGETSWTYSLGGRCAGIIYSPDERFFALPVRKDTSSGNTQIHGIHVFDSRKPGNGNSKLLWTFKTEGVVADAAISSDC TVAAVELPLKLKNGDVTGKHRLIIVR
Sequences:
>Translated_506_residues MKKSSIALILLFAFILLTVSGCISSDIMSSGNVSSDSTSPDEGEGNAGENSRNVLNQIDTASYEKSSPYLYWEYELGDII PENISEGRGNTQDCVRFTTDGKYLAAGTGKDLTVLDVAGKNVLWKKTLKGNISDLSFSIDGKYLIAGERSADGCIYSFDA STGEEIHRYRTADDLGTDENYRNQPCIYKIKTSDDAVYIAAGRYWKDSGYELASRVYRFSPDGNLSWKLPAAENYPRSVN WIDSSLDGKNVVFSTGDWTNSLEIGAVIYSVDERGSLRWKYEIPPLRPYFVSAAVWHGLDISDDGSIITAFTGDGRKYLF YDSEMKKPGDGKSEWHSAKYQSNVTAPEELEGSVIYAYGENAKIASEDEILYLTGATLPAYYPGNVPMAYPLENSLVSCD AETGETSWTYSLGGRCAGIIYSPDERFFALPVRKDTSSGNTQIHGIHVFDSRKPGNGNSKLLWTFKTEGVVADAAISSDC TVAAVELPLKLKNGDVTGKHRLIIVR >Mature_506_residues MKKSSIALILLFAFILLTVSGCISSDIMSSGNVSSDSTSPDEGEGNAGENSRNVLNQIDTASYEKSSPYLYWEYELGDII PENISEGRGNTQDCVRFTTDGKYLAAGTGKDLTVLDVAGKNVLWKKTLKGNISDLSFSIDGKYLIAGERSADGCIYSFDA STGEEIHRYRTADDLGTDENYRNQPCIYKIKTSDDAVYIAAGRYWKDSGYELASRVYRFSPDGNLSWKLPAAENYPRSVN WIDSSLDGKNVVFSTGDWTNSLEIGAVIYSVDERGSLRWKYEIPPLRPYFVSAAVWHGLDISDDGSIITAFTGDGRKYLF YDSEMKKPGDGKSEWHSAKYQSNVTAPEELEGSVIYAYGENAKIASEDEILYLTGATLPAYYPGNVPMAYPLENSLVSCD AETGETSWTYSLGGRCAGIIYSPDERFFALPVRKDTSSGNTQIHGIHVFDSRKPGNGNSKLLWTFKTEGVVADAAISSDC TVAAVELPLKLKNGDVTGKHRLIIVR
Specific function: Unknown
COG id: COG2319
COG function: function code R; FOG: WD40 repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55548; Mature: 55548
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKSSIALILLFAFILLTVSGCISSDIMSSGNVSSDSTSPDEGEGNAGENSRNVLNQIDT CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC ASYEKSSPYLYWEYELGDIIPENISEGRGNTQDCVRFTTDGKYLAAGTGKDLTVLDVAGK CCCCCCCCEEEEEEECCCCCCCCHHCCCCCCHHEEEEECCCCEEEECCCCCEEEEEECCC NVLWKKTLKGNISDLSFSIDGKYLIAGERSADGCIYSFDASTGEEIHRYRTADDLGTDEN CEEEEHHHCCCCCEEEEEECCEEEEEECCCCCCEEEEECCCCCHHHHHHCCCCCCCCCCC YRNQPCIYKIKTSDDAVYIAAGRYWKDSGYELASRVYRFSPDGNLSWKLPAAENYPRSVN CCCCCEEEEEECCCCEEEEEECCEECCCCHHHHHHEEEECCCCCEEEECCCCCCCCCCCE WIDSSLDGKNVVFSTGDWTNSLEIGAVIYSVDERGSLRWKYEIPPLRPYFVSAAVWHGLD EECCCCCCCEEEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCHHHEEHHHHCCCC ISDDGSIITAFTGDGRKYLFYDSEMKKPGDGKSEWHSAKYQSNVTAPEELEGSVIYAYGE CCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHCCHHCCCCCCHHHCCCCEEEEECC NAKIASEDEILYLTGATLPAYYPGNVPMAYPLENSLVSCDAETGETSWTYSLGGRCAGII CCEECCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEECCCCCCCEEEEECCCEEEEEE YSPDERFFALPVRKDTSSGNTQIHGIHVFDSRKPGNGNSKLLWTFKTEGVVADAAISSDC ECCCCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEEECCCCC TVAAVELPLKLKNGDVTGKHRLIIVR EEEEEEEEEEEECCCCCCCEEEEEEC >Mature Secondary Structure MKKSSIALILLFAFILLTVSGCISSDIMSSGNVSSDSTSPDEGEGNAGENSRNVLNQIDT CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC ASYEKSSPYLYWEYELGDIIPENISEGRGNTQDCVRFTTDGKYLAAGTGKDLTVLDVAGK CCCCCCCCEEEEEEECCCCCCCCHHCCCCCCHHEEEEECCCCEEEECCCCCEEEEEECCC NVLWKKTLKGNISDLSFSIDGKYLIAGERSADGCIYSFDASTGEEIHRYRTADDLGTDEN CEEEEHHHCCCCCEEEEEECCEEEEEECCCCCCEEEEECCCCCHHHHHHCCCCCCCCCCC YRNQPCIYKIKTSDDAVYIAAGRYWKDSGYELASRVYRFSPDGNLSWKLPAAENYPRSVN CCCCCEEEEEECCCCEEEEEECCEECCCCHHHHHHEEEECCCCCEEEECCCCCCCCCCCE WIDSSLDGKNVVFSTGDWTNSLEIGAVIYSVDERGSLRWKYEIPPLRPYFVSAAVWHGLD EECCCCCCCEEEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCHHHEEHHHHCCCC ISDDGSIITAFTGDGRKYLFYDSEMKKPGDGKSEWHSAKYQSNVTAPEELEGSVIYAYGE CCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHCCHHCCCCCCHHHCCCCEEEEECC NAKIASEDEILYLTGATLPAYYPGNVPMAYPLENSLVSCDAETGETSWTYSLGGRCAGII CCEECCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEECCCCCCCEEEEECCCEEEEEE YSPDERFFALPVRKDTSSGNTQIHGIHVFDSRKPGNGNSKLLWTFKTEGVVADAAISSDC ECCCCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEEECCCCC TVAAVELPLKLKNGDVTGKHRLIIVR EEEEEEEEEEEECCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA