Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

Click here to switch to the map view.

The map label for this gene is 21228092

Identifier: 21228092

GI number: 21228092

Start: 2368610

End: 2369536

Strand: Reverse

Name: 21228092

Synonym: MM_1990

Alternate gene names: NA

Gene position: 2369536-2368610 (Counterclockwise)

Preceding gene: 21228093

Following gene: 21228091

Centisome position: 57.85

GC content: 45.31

Gene sequence:

>927_bases
ATGATCCTCTCTTCCGGCTGTTTTGGGAGTTTAGAGCATAGAGATGTTTTCAGGGAATATGATGAGGTTTTTCTTCAGAA
TATAGATATAATGGCCACTCCGCAGGAAGAGAATGCCTTACTGACAGTTACCCCTTATATCCGCAATGACCAGGACACTG
ACAGTTCCATGCTCTCTGTCAAAGTCAAAATTATTGATGAGGAAACCCATCTGATAGCAGCAGAAAAAGATGCGGACATG
GGTTACGTTAAAGCCCGATCTCTTGTTTATAATGCCGTGCCTCTAGGGACTGTAAACCCGGGGAATTATCAGGTGGAAGT
CCAGCTTTTCAGGGAAGGGGAAATCCTTGATTCGGAAAGTGAGCACATCACCATCAGGGTAGATACCTCTGTTGATCAGC
CGGCTGATATCCTGCTTACAGATATGAACCTTGTAATTACCCAGTTCACTGACAGGGACGCAAAGGCTGTGGTGGATATT
TCCCCCGGAGTTTATAACCAGGGTGGAGATTCCAGACCTCTAACCATGCTGGTCACTGCAAAAAAGGATGAATACACTTC
ATACACCGAAAGCGACGAACTCGGGATTGTAAAAGGTTCAGGCCAGCTCAGAGGACATGTGCGCTTCGTGCTTCCCAGAA
GGGCAGAATATACATTCGCAGTTAGTGTGGAAGAGAATGGCAGGGAAATTATCACTTCCGAAACAACAGAGCCAGTAAAA
ATGGATAAGATAGAGCGGAATGCTGTCAAAAATTACCCTCTTGTTGAAGAAGGCACACCCATTGAACTCCCAGCAGAAGA
AACTCCCGATTCCGAAGGTTCAACTCCGGGTTTTGAGAGCCTGTTCATGTTTATAGCCTTCCTTCTGGCTGCAGGCATCA
TAATTAACAGGGGACCTGATAACAAAAAGAATGAAAAAGAGGAGTAA

Upstream 100 bases:

>100_bases
TAATCCGGATCTGGTCCTCATGAGATTCAGGCAACGAATAAAACCCGGAAAATCCCCTCTTTTATTATCTGGCGGATTTT
TAATCAGCATTTTGCTGATT

Downstream 100 bases:

>100_bases
TATGACTGAAAACGAACTCAACCCTCACAATGAAGAAAAAGGCACAGATAACCGTTCTGTGGGAATCCAGAAGCCTGAAA
AAGACAATAGAACGGAAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MILSSGCFGSLEHRDVFREYDEVFLQNIDIMATPQEENALLTVTPYIRNDQDTDSSMLSVKVKIIDEETHLIAAEKDADM
GYVKARSLVYNAVPLGTVNPGNYQVEVQLFREGEILDSESEHITIRVDTSVDQPADILLTDMNLVITQFTDRDAKAVVDI
SPGVYNQGGDSRPLTMLVTAKKDEYTSYTESDELGIVKGSGQLRGHVRFVLPRRAEYTFAVSVEENGREIITSETTEPVK
MDKIERNAVKNYPLVEEGTPIELPAEETPDSEGSTPGFESLFMFIAFLLAAGIIINRGPDNKKNEKEE

Sequences:

>Translated_308_residues
MILSSGCFGSLEHRDVFREYDEVFLQNIDIMATPQEENALLTVTPYIRNDQDTDSSMLSVKVKIIDEETHLIAAEKDADM
GYVKARSLVYNAVPLGTVNPGNYQVEVQLFREGEILDSESEHITIRVDTSVDQPADILLTDMNLVITQFTDRDAKAVVDI
SPGVYNQGGDSRPLTMLVTAKKDEYTSYTESDELGIVKGSGQLRGHVRFVLPRRAEYTFAVSVEENGREIITSETTEPVK
MDKIERNAVKNYPLVEEGTPIELPAEETPDSEGSTPGFESLFMFIAFLLAAGIIINRGPDNKKNEKEE
>Mature_308_residues
MILSSGCFGSLEHRDVFREYDEVFLQNIDIMATPQEENALLTVTPYIRNDQDTDSSMLSVKVKIIDEETHLIAAEKDADM
GYVKARSLVYNAVPLGTVNPGNYQVEVQLFREGEILDSESEHITIRVDTSVDQPADILLTDMNLVITQFTDRDAKAVVDI
SPGVYNQGGDSRPLTMLVTAKKDEYTSYTESDELGIVKGSGQLRGHVRFVLPRRAEYTFAVSVEENGREIITSETTEPVK
MDKIERNAVKNYPLVEEGTPIELPAEETPDSEGSTPGFESLFMFIAFLLAAGIIINRGPDNKKNEKEE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34335; Mature: 34335

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILSSGCFGSLEHRDVFREYDEVFLQNIDIMATPQEENALLTVTPYIRNDQDTDSSMLSV
CEECCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEECCCCCCCCCCCCEEEE
KVKIIDEETHLIAAEKDADMGYVKARSLVYNAVPLGTVNPGNYQVEVQLFREGEILDSES
EEEEEECCEEEEEECCCCCCCHHHHHHEEEECCCCCCCCCCCEEEEEEEEECCCEECCCC
EHITIRVDTSVDQPADILLTDMNLVITQFTDRDAKAVVDISPGVYNQGGDSRPLTMLVTA
CEEEEEEECCCCCCCEEEEECCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEE
KKDEYTSYTESDELGIVKGSGQLRGHVRFVLPRRAEYTFAVSVEENGREIITSETTEPVK
CCCCCCCCCCCCCEEEEECCCCEEEEEEEEEECCCCEEEEEEECCCCCEEEECCCCCCEE
MDKIERNAVKNYPLVEEGTPIELPAEETPDSEGSTPGFESLFMFIAFLLAAGIIINRGPD
HHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCC
NKKNEKEE
CCCCCCCC
>Mature Secondary Structure
MILSSGCFGSLEHRDVFREYDEVFLQNIDIMATPQEENALLTVTPYIRNDQDTDSSMLSV
CEECCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEECCCCCCCCCCCCEEEE
KVKIIDEETHLIAAEKDADMGYVKARSLVYNAVPLGTVNPGNYQVEVQLFREGEILDSES
EEEEEECCEEEEEECCCCCCCHHHHHHEEEECCCCCCCCCCCEEEEEEEEECCCEECCCC
EHITIRVDTSVDQPADILLTDMNLVITQFTDRDAKAVVDISPGVYNQGGDSRPLTMLVTA
CEEEEEEECCCCCCCEEEEECCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEE
KKDEYTSYTESDELGIVKGSGQLRGHVRFVLPRRAEYTFAVSVEENGREIITSETTEPVK
CCCCCCCCCCCCCEEEEECCCCEEEEEEEEEECCCCEEEEEEECCCCCEEEECCCCCCEE
MDKIERNAVKNYPLVEEGTPIELPAEETPDSEGSTPGFESLFMFIAFLLAAGIIINRGPD
HHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCC
NKKNEKEE
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA