Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

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The map label for this gene is 21228027

Identifier: 21228027

GI number: 21228027

Start: 2288010

End: 2288402

Strand: Reverse

Name: 21228027

Synonym: MM_1925

Alternate gene names: NA

Gene position: 2288402-2288010 (Counterclockwise)

Preceding gene: 21228028

Following gene: 21228024

Centisome position: 55.86

GC content: 37.4

Gene sequence:

>393_bases
ATGGATAAAACCAGTAATATCAGAGCGAAAAAAGTCGGATCAAATCTAAAAGAGTTTAAAGCCGATAATAAAGAGGCTTA
TGATATTGATACCGATTTTTCGGAAGGACTCGAAGACACTAATTACCTCACAGGCAACTTTAGAAAAATCTGGGACTATC
TAGGATTATTGTTTTCCATGCTAGCAGACTCATTTAACAGAAAATACCCGGCTCCGAAGAAAACGGTAGTTGTGATGGCG
GTTACTCTCATGTATCTTGTAAGTCCGGTTGATTTTATTCCAGATTTAATTCCTCTACTCGGATTTGCAGATGATATCGC
ATTGATTGTTTTTGCATTTAGCCTTATTAAAGAGGACCTGGACAATTACAGAGCCTGGAAAATGAGTTACTGA

Upstream 100 bases:

>100_bases
AAACATATTCTGTATAATATTACTCTGGAAAGTAATAACACTTCGGAAAGTAATAACACTCCGGAAAGCCTGAATATAAT
CCGGAGATAGGGAGGATCAT

Downstream 100 bases:

>100_bases
AAGCATTTTCGATCCGGATAGTATAATTCAAGCTTTAGCTTTACATCTTTGCCGGGGTAACATTTTATGTGGGTATTAAA
AGTTGTTACCTGCAGGGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MDKTSNIRAKKVGSNLKEFKADNKEAYDIDTDFSEGLEDTNYLTGNFRKIWDYLGLLFSMLADSFNRKYPAPKKTVVVMA
VTLMYLVSPVDFIPDLIPLLGFADDIALIVFAFSLIKEDLDNYRAWKMSY

Sequences:

>Translated_130_residues
MDKTSNIRAKKVGSNLKEFKADNKEAYDIDTDFSEGLEDTNYLTGNFRKIWDYLGLLFSMLADSFNRKYPAPKKTVVVMA
VTLMYLVSPVDFIPDLIPLLGFADDIALIVFAFSLIKEDLDNYRAWKMSY
>Mature_130_residues
MDKTSNIRAKKVGSNLKEFKADNKEAYDIDTDFSEGLEDTNYLTGNFRKIWDYLGLLFSMLADSFNRKYPAPKKTVVVMA
VTLMYLVSPVDFIPDLIPLLGFADDIALIVFAFSLIKEDLDNYRAWKMSY

Specific function: Unknown

COG id: COG3339

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14912; Mature: 14912

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKTSNIRAKKVGSNLKEFKADNKEAYDIDTDFSEGLEDTNYLTGNFRKIWDYLGLLFSM
CCCCCCCHHHHHHCHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHH
LADSFNRKYPAPKKTVVVMAVTLMYLVSPVDFIPDLIPLLGFADDIALIVFAFSLIKEDL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
DNYRAWKMSY
HHHHHHCCCC
>Mature Secondary Structure
MDKTSNIRAKKVGSNLKEFKADNKEAYDIDTDFSEGLEDTNYLTGNFRKIWDYLGLLFSM
CCCCCCCHHHHHHCHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHH
LADSFNRKYPAPKKTVVVMAVTLMYLVSPVDFIPDLIPLLGFADDIALIVFAFSLIKEDL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
DNYRAWKMSY
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA