| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227999
Identifier: 21227999
GI number: 21227999
Start: 2256297
End: 2258159
Strand: Direct
Name: 21227999
Synonym: MM_1897
Alternate gene names: NA
Gene position: 2256297-2258159 (Clockwise)
Preceding gene: 21227991
Following gene: 21228000
Centisome position: 55.08
GC content: 43.59
Gene sequence:
>1863_bases ATGATCACAACCGGCGATATTACTGAAACCATTACATGTGATATCATCGGAAATGCGGTCGTTGTCGAAGAAATGGAATT TGAGGATAACATGAGTGATGATAACATGAGTAATGTTACTGACGGTATGAATAACGCCACCGGTAATACGACTGATGTTA GCAGTGATATGAATATTCCCGAAACGCTTGAGGTAAGCGGGAAGATTATTCTGATCAAAGATATGGGTAACATGACAGAA AAAGCCGTCATGGCCGGAAAAGTTGATGGTATACCTGGAAGCGTGGTCATCTTCGGAAAAACGGATGGCATGGCAGAAGG TATGGATGATGCCACTGAAAATATGACTGAGGCTGGAAATAACGTTACTGAGGCTGGAAATAACGTTACTGAGACTGCCA ATAACATTACTGAGACTGTAAATAATGTTACTGAGACTGCCGATAACGCAAATAATGCTACAAATAACGCTACCAACGAT ACCAGTAATATGGATGTCTCCAGAAACATAACCATAATTACAACCGGGAATATGACCGGAACAATCATGTTGAACACGTC ACAGGGCATGGATAATGCCAGCGGTATGAATAACATGACAGAAGGCATGGACAACATGACTGTACTTACGGCTGGAAATA TGACCGGAACCGTGACCGGCGATATGACCCGAAAAATGGTTGTAATCAAAAACATAGCTGATGCCGCCGAAATATCCGAT GCAATAGTCAATCTCACTGAAACGGACACAGGCACGGCTAATATGACTGAACCCGCTGCATACAATTTCACCGGGAACAT GGTCATAGTCAGAAGTACGGATGATGTACCCGAAATAGATGAAGAGGATATAGATGATCTGATTGCGATGGACGGAAATA CGGCTATTATCGGGGCTATGGATAACACAACCGAAATGGAAGAAAACACCAATCAGGGCGTGGAAAACGTAACCAAGAAA ATGGTCGCAGTCAGAAATATCGATGATATGGTCAGAATCGTGACATGGACGGTTATCTGCAACATAACTCAGAACACGGC TACCATTGAAGATATTGGTGATCTGGTCGAAAAGATGACTAACGTGACCACTGGAAATGTGACCAACGTAACTGACAATG TTACAGGCAACATGACCAATGTGACCACGGACAACATGACCGGTGTAGCTGATAATGTTACAGGCAACATGACCAATGTG ACCACGGACAACATGACCGGTGTAGCTGATAATGTTACAGACAACATGACCGGTAATATGACTGGCGTGACCGGGGACCA GACCGGCAATGTTTCAAACGTGCCACTCAAGCTTGAGAGCATCCAGGAAATCGAAAACGACCGGGAATTCAATAAAATGT GGTTCGTCTACATAAACGGGGAACCAGCTCAACAGGATTTCGGGATGAACAAAGTAAATGAAGGAGACGTAATAAGCTTC TGGTACACAACTGAAGATGATGGAAATGCGGTACTTGGAGATGCTCTTTACGTAGCTAATATCACAGTTGTCGATGAAGC AGAAGAGCAGGAGAACGAAAATGAGGATCTTACTGTATTATTCGACAATACGGTAAACCTCACTGAAGGGACCTTTACCT TCACGCCTGAAGGCTCTAACCAGGAGTCTGAAATAGATAACTTTACTGACATTGGAGCTCTTAATGCGAGCGGGCTTGAA TTTGTCGCGTCAGTTATGGACAATGCGACTGACGACACCAGTGACGACATGGATGATATGAATAACGACTACATGGGTGA AGACGATACCAATAACATGGACGAAGATACGGGTACAGAAGGCATGAATGAAAACGACACGGATGACATGAATGGAGACG ACAATACAAATAACGACATGTAA
Upstream 100 bases:
>100_bases GATGAAATTGATGGTTTTCCTGTTAGTATTATGTCTGGCTCTGCCTATTGTGGCCGTACAGGCACAGACAGACGTATTCG GAAACATGGAGAACATAAAC
Downstream 100 bases:
>100_bases TTGATCAACAGTGTCTTCCGATTGGAAACTCTGTTCTGGAAGTCTGGGCTGTAAGTCTATATGATTTGCAGCTCTCTTCT TTTTTTCTAATATGGCATTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 620; Mature: 620
Protein sequence:
>620_residues MITTGDITETITCDIIGNAVVVEEMEFEDNMSDDNMSNVTDGMNNATGNTTDVSSDMNIPETLEVSGKIILIKDMGNMTE KAVMAGKVDGIPGSVVIFGKTDGMAEGMDDATENMTEAGNNVTEAGNNVTETANNITETVNNVTETADNANNATNNATND TSNMDVSRNITIITTGNMTGTIMLNTSQGMDNASGMNNMTEGMDNMTVLTAGNMTGTVTGDMTRKMVVIKNIADAAEISD AIVNLTETDTGTANMTEPAAYNFTGNMVIVRSTDDVPEIDEEDIDDLIAMDGNTAIIGAMDNTTEMEENTNQGVENVTKK MVAVRNIDDMVRIVTWTVICNITQNTATIEDIGDLVEKMTNVTTGNVTNVTDNVTGNMTNVTTDNMTGVADNVTGNMTNV TTDNMTGVADNVTDNMTGNMTGVTGDQTGNVSNVPLKLESIQEIENDREFNKMWFVYINGEPAQQDFGMNKVNEGDVISF WYTTEDDGNAVLGDALYVANITVVDEAEEQENENEDLTVLFDNTVNLTEGTFTFTPEGSNQESEIDNFTDIGALNASGLE FVASVMDNATDDTSDDMDDMNNDYMGEDDTNNMDEDTGTEGMNENDTDDMNGDDNTNNDM
Sequences:
>Translated_620_residues MITTGDITETITCDIIGNAVVVEEMEFEDNMSDDNMSNVTDGMNNATGNTTDVSSDMNIPETLEVSGKIILIKDMGNMTE KAVMAGKVDGIPGSVVIFGKTDGMAEGMDDATENMTEAGNNVTEAGNNVTETANNITETVNNVTETADNANNATNNATND TSNMDVSRNITIITTGNMTGTIMLNTSQGMDNASGMNNMTEGMDNMTVLTAGNMTGTVTGDMTRKMVVIKNIADAAEISD AIVNLTETDTGTANMTEPAAYNFTGNMVIVRSTDDVPEIDEEDIDDLIAMDGNTAIIGAMDNTTEMEENTNQGVENVTKK MVAVRNIDDMVRIVTWTVICNITQNTATIEDIGDLVEKMTNVTTGNVTNVTDNVTGNMTNVTTDNMTGVADNVTGNMTNV TTDNMTGVADNVTDNMTGNMTGVTGDQTGNVSNVPLKLESIQEIENDREFNKMWFVYINGEPAQQDFGMNKVNEGDVISF WYTTEDDGNAVLGDALYVANITVVDEAEEQENENEDLTVLFDNTVNLTEGTFTFTPEGSNQESEIDNFTDIGALNASGLE FVASVMDNATDDTSDDMDDMNNDYMGEDDTNNMDEDTGTEGMNENDTDDMNGDDNTNNDM >Mature_620_residues MITTGDITETITCDIIGNAVVVEEMEFEDNMSDDNMSNVTDGMNNATGNTTDVSSDMNIPETLEVSGKIILIKDMGNMTE KAVMAGKVDGIPGSVVIFGKTDGMAEGMDDATENMTEAGNNVTEAGNNVTETANNITETVNNVTETADNANNATNNATND TSNMDVSRNITIITTGNMTGTIMLNTSQGMDNASGMNNMTEGMDNMTVLTAGNMTGTVTGDMTRKMVVIKNIADAAEISD AIVNLTETDTGTANMTEPAAYNFTGNMVIVRSTDDVPEIDEEDIDDLIAMDGNTAIIGAMDNTTEMEENTNQGVENVTKK MVAVRNIDDMVRIVTWTVICNITQNTATIEDIGDLVEKMTNVTTGNVTNVTDNVTGNMTNVTTDNMTGVADNVTGNMTNV TTDNMTGVADNVTDNMTGNMTGVTGDQTGNVSNVPLKLESIQEIENDREFNKMWFVYINGEPAQQDFGMNKVNEGDVISF WYTTEDDGNAVLGDALYVANITVVDEAEEQENENEDLTVLFDNTVNLTEGTFTFTPEGSNQESEIDNFTDIGALNASGLE FVASVMDNATDDTSDDMDDMNNDYMGEDDTNNMDEDTGTEGMNENDTDDMNGDDNTNNDM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66579; Mature: 66579
Theoretical pI: Translated: 3.27; Mature: 3.27
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 7.6 %Met (Translated Protein) 7.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 7.6 %Met (Mature Protein) 7.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITTGDITETITCDIIGNAVVVEEMEFEDNMSDDNMSNVTDGMNNATGNTTDVSSDMNIP CCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC ETLEVSGKIILIKDMGNMTEKAVMAGKVDGIPGSVVIFGKTDGMAEGMDDATENMTEAGN CEEECCCCEEEEECCCCCHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCC NVTEAGNNVTETANNITETVNNVTETADNANNATNNATNDTSNMDVSRNITIITTGNMTG CHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCEEEEEECCCEE TIMLNTSQGMDNASGMNNMTEGMDNMTVLTAGNMTGTVTGDMTRKMVVIKNIADAAEISD EEEEECCCCCCCCCCCCHHHHCCCCEEEEEECCCEEEEECCCCEEEEEEHHHHHHHHHHH AIVNLTETDTGTANMTEPAAYNFTGNMVIVRSTDDVPEIDEEDIDDLIAMDGNTAIIGAM HHEEEECCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCCHHHHHHHEEECCCEEEEEEC DNTTEMEENTNQGVENVTKKMVAVRNIDDMVRIVTWTVICNITQNTATIEDIGDLVEKMT CCCCHHHHHHCCHHHHHHHHHHHHHCHHHHHHHEEEEEEEEECCCCCCHHHHHHHHHHHH NVTTGNVTNVTDNVTGNMTNVTTDNMTGVADNVTGNMTNVTTDNMTGVADNVTDNMTGNM CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCE TGVTGDQTGNVSNVPLKLESIQEIENDREFNKMWFVYINGEPAQQDFGMNKVNEGDVISF EECCCCCCCCCCCCCEEHHHHHHHHCCCCCCEEEEEEECCCCCHHHCCCCCCCCCCEEEE WYTTEDDGNAVLGDALYVANITVVDEAEEQENENEDLTVLFDNTVNLTEGTFTFTPEGSN EEEECCCCCEEEECEEEEEEEEEEECCHHHCCCCCCEEEEECCEEEEECCEEEECCCCCC QESEIDNFTDIGALNASGLEFVASVMDNATDDTSDDMDDMNNDYMGEDDTNNMDEDTGTE CHHHCCCCHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCC GMNENDTDDMNGDDNTNNDM CCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MITTGDITETITCDIIGNAVVVEEMEFEDNMSDDNMSNVTDGMNNATGNTTDVSSDMNIP CCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC ETLEVSGKIILIKDMGNMTEKAVMAGKVDGIPGSVVIFGKTDGMAEGMDDATENMTEAGN CEEECCCCEEEEECCCCCHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCC NVTEAGNNVTETANNITETVNNVTETADNANNATNNATNDTSNMDVSRNITIITTGNMTG CHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCEEEEEECCCEE TIMLNTSQGMDNASGMNNMTEGMDNMTVLTAGNMTGTVTGDMTRKMVVIKNIADAAEISD EEEEECCCCCCCCCCCCHHHHCCCCEEEEEECCCEEEEECCCCEEEEEEHHHHHHHHHHH AIVNLTETDTGTANMTEPAAYNFTGNMVIVRSTDDVPEIDEEDIDDLIAMDGNTAIIGAM HHEEEECCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCCHHHHHHHEEECCCEEEEEEC DNTTEMEENTNQGVENVTKKMVAVRNIDDMVRIVTWTVICNITQNTATIEDIGDLVEKMT CCCCHHHHHHCCHHHHHHHHHHHHHCHHHHHHHEEEEEEEEECCCCCCHHHHHHHHHHHH NVTTGNVTNVTDNVTGNMTNVTTDNMTGVADNVTGNMTNVTTDNMTGVADNVTDNMTGNM CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCE TGVTGDQTGNVSNVPLKLESIQEIENDREFNKMWFVYINGEPAQQDFGMNKVNEGDVISF EECCCCCCCCCCCCCEEHHHHHHHHCCCCCCEEEEEEECCCCCHHHCCCCCCCCCCEEEE WYTTEDDGNAVLGDALYVANITVVDEAEEQENENEDLTVLFDNTVNLTEGTFTFTPEGSN EEEECCCCCEEEECEEEEEEEEEEECCHHHCCCCCCEEEEECCEEEEECCEEEECCCCCC QESEIDNFTDIGALNASGLEFVASVMDNATDDTSDDMDDMNNDYMGEDDTNNMDEDTGTE CHHHCCCCHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCC GMNENDTDDMNGDDNTNNDM CCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA