Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

Click here to switch to the map view.

The map label for this gene is 21227989

Identifier: 21227989

GI number: 21227989

Start: 2241322

End: 2241993

Strand: Direct

Name: 21227989

Synonym: MM_1887

Alternate gene names: NA

Gene position: 2241322-2241993 (Clockwise)

Preceding gene: 21227988

Following gene: 21227991

Centisome position: 54.72

GC content: 36.01

Gene sequence:

>672_bases
ATGACTGACAAGCCAGAGTTAACTGCCATAGATGTGCTTCTCAATCCAGACGAAATCCTGATTAAAAAAGCTTTTGAAGT
TAATGAGAGACTAAGATATGAATTTTCAAAAGGATTTAAACTGGATGAATCTCATGTCCCTCATATCACTATTTTACAAC
GCTACGTACGAACAACAGACTTGGAGAAAGTATTTGATGCAGTCAAAAATGTGATTTCCTCTGAAAATGTTGCATCATTA
CAATTAACTGCCGTAAAAATAGAATGCATAGCCTCAGAAGGTTCATTAGGTCTAGCTGCAATTGTTATTTCTCCGACAAA
AGATCTCTTAAACTTCCAATCTAAATTAATAGATGCCCTTAACCCCTATATAGAAAAGAATGGCACATCCACGGCTTATT
ACGTGGCTCCTGAAGAAGATCCAAACATTAATGAAGCAACATTGGAGTACGTAGAGAATTATATCCCAGATCATAGTGGT
AAAAACTTCGTTCCCCATGTAACTGTTGGTGTTAATACCATTGAATCACTTGAAAAAATTTCTAATGAGCCATTTACTCC
CCTAAAATCTTCACCAGTAGGTATTGCAGTATACCATCTTGGTAATTATGGTACGGCACGTAAAGTTTTGAAAGAATGGA
ACTTATCTCAAATGAACCGAAAACATGGGTAA

Upstream 100 bases:

>100_bases
AATACGCCTATGAAAATGGATCAGAGAAGATATTAGCAATTGCTAAAGAAAAAAATTTTACAATTGTAAGCATGAAAAAT
GACTGGAAGGAGATTTTTAA

Downstream 100 bases:

>100_bases
AAATAAGAAGCATTACTAGAATATAATCACCAATTAGGACTTACGCACTTGAGGTTAAAAATCACGATCAATATACATCA
CTATCAGGCATATTTTTTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MTDKPELTAIDVLLNPDEILIKKAFEVNERLRYEFSKGFKLDESHVPHITILQRYVRTTDLEKVFDAVKNVISSENVASL
QLTAVKIECIASEGSLGLAAIVISPTKDLLNFQSKLIDALNPYIEKNGTSTAYYVAPEEDPNINEATLEYVENYIPDHSG
KNFVPHVTVGVNTIESLEKISNEPFTPLKSSPVGIAVYHLGNYGTARKVLKEWNLSQMNRKHG

Sequences:

>Translated_223_residues
MTDKPELTAIDVLLNPDEILIKKAFEVNERLRYEFSKGFKLDESHVPHITILQRYVRTTDLEKVFDAVKNVISSENVASL
QLTAVKIECIASEGSLGLAAIVISPTKDLLNFQSKLIDALNPYIEKNGTSTAYYVAPEEDPNINEATLEYVENYIPDHSG
KNFVPHVTVGVNTIESLEKISNEPFTPLKSSPVGIAVYHLGNYGTARKVLKEWNLSQMNRKHG
>Mature_222_residues
TDKPELTAIDVLLNPDEILIKKAFEVNERLRYEFSKGFKLDESHVPHITILQRYVRTTDLEKVFDAVKNVISSENVASLQ
LTAVKIECIASEGSLGLAAIVISPTKDLLNFQSKLIDALNPYIEKNGTSTAYYVAPEEDPNINEATLEYVENYIPDHSGK
NFVPHVTVGVNTIESLEKISNEPFTPLKSSPVGIAVYHLGNYGTARKVLKEWNLSQMNRKHG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24916; Mature: 24784

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDKPELTAIDVLLNPDEILIKKAFEVNERLRYEFSKGFKLDESHVPHITILQRYVRTTD
CCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
LEKVFDAVKNVISSENVASLQLTAVKIECIASEGSLGLAAIVISPTKDLLNFQSKLIDAL
HHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHH
NPYIEKNGTSTAYYVAPEEDPNINEATLEYVENYIPDHSGKNFVPHVTVGVNTIESLEKI
HHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHH
SNEPFTPLKSSPVGIAVYHLGNYGTARKVLKEWNLSQMNRKHG
CCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCHHHHHCCCC
>Mature Secondary Structure 
TDKPELTAIDVLLNPDEILIKKAFEVNERLRYEFSKGFKLDESHVPHITILQRYVRTTD
CCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
LEKVFDAVKNVISSENVASLQLTAVKIECIASEGSLGLAAIVISPTKDLLNFQSKLIDAL
HHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHH
NPYIEKNGTSTAYYVAPEEDPNINEATLEYVENYIPDHSGKNFVPHVTVGVNTIESLEKI
HHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHH
SNEPFTPLKSSPVGIAVYHLGNYGTARKVLKEWNLSQMNRKHG
CCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA