| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227989
Identifier: 21227989
GI number: 21227989
Start: 2241322
End: 2241993
Strand: Direct
Name: 21227989
Synonym: MM_1887
Alternate gene names: NA
Gene position: 2241322-2241993 (Clockwise)
Preceding gene: 21227988
Following gene: 21227991
Centisome position: 54.72
GC content: 36.01
Gene sequence:
>672_bases ATGACTGACAAGCCAGAGTTAACTGCCATAGATGTGCTTCTCAATCCAGACGAAATCCTGATTAAAAAAGCTTTTGAAGT TAATGAGAGACTAAGATATGAATTTTCAAAAGGATTTAAACTGGATGAATCTCATGTCCCTCATATCACTATTTTACAAC GCTACGTACGAACAACAGACTTGGAGAAAGTATTTGATGCAGTCAAAAATGTGATTTCCTCTGAAAATGTTGCATCATTA CAATTAACTGCCGTAAAAATAGAATGCATAGCCTCAGAAGGTTCATTAGGTCTAGCTGCAATTGTTATTTCTCCGACAAA AGATCTCTTAAACTTCCAATCTAAATTAATAGATGCCCTTAACCCCTATATAGAAAAGAATGGCACATCCACGGCTTATT ACGTGGCTCCTGAAGAAGATCCAAACATTAATGAAGCAACATTGGAGTACGTAGAGAATTATATCCCAGATCATAGTGGT AAAAACTTCGTTCCCCATGTAACTGTTGGTGTTAATACCATTGAATCACTTGAAAAAATTTCTAATGAGCCATTTACTCC CCTAAAATCTTCACCAGTAGGTATTGCAGTATACCATCTTGGTAATTATGGTACGGCACGTAAAGTTTTGAAAGAATGGA ACTTATCTCAAATGAACCGAAAACATGGGTAA
Upstream 100 bases:
>100_bases AATACGCCTATGAAAATGGATCAGAGAAGATATTAGCAATTGCTAAAGAAAAAAATTTTACAATTGTAAGCATGAAAAAT GACTGGAAGGAGATTTTTAA
Downstream 100 bases:
>100_bases AAATAAGAAGCATTACTAGAATATAATCACCAATTAGGACTTACGCACTTGAGGTTAAAAATCACGATCAATATACATCA CTATCAGGCATATTTTTTAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 223; Mature: 222
Protein sequence:
>223_residues MTDKPELTAIDVLLNPDEILIKKAFEVNERLRYEFSKGFKLDESHVPHITILQRYVRTTDLEKVFDAVKNVISSENVASL QLTAVKIECIASEGSLGLAAIVISPTKDLLNFQSKLIDALNPYIEKNGTSTAYYVAPEEDPNINEATLEYVENYIPDHSG KNFVPHVTVGVNTIESLEKISNEPFTPLKSSPVGIAVYHLGNYGTARKVLKEWNLSQMNRKHG
Sequences:
>Translated_223_residues MTDKPELTAIDVLLNPDEILIKKAFEVNERLRYEFSKGFKLDESHVPHITILQRYVRTTDLEKVFDAVKNVISSENVASL QLTAVKIECIASEGSLGLAAIVISPTKDLLNFQSKLIDALNPYIEKNGTSTAYYVAPEEDPNINEATLEYVENYIPDHSG KNFVPHVTVGVNTIESLEKISNEPFTPLKSSPVGIAVYHLGNYGTARKVLKEWNLSQMNRKHG >Mature_222_residues TDKPELTAIDVLLNPDEILIKKAFEVNERLRYEFSKGFKLDESHVPHITILQRYVRTTDLEKVFDAVKNVISSENVASLQ LTAVKIECIASEGSLGLAAIVISPTKDLLNFQSKLIDALNPYIEKNGTSTAYYVAPEEDPNINEATLEYVENYIPDHSGK NFVPHVTVGVNTIESLEKISNEPFTPLKSSPVGIAVYHLGNYGTARKVLKEWNLSQMNRKHG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24916; Mature: 24784
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDKPELTAIDVLLNPDEILIKKAFEVNERLRYEFSKGFKLDESHVPHITILQRYVRTTD CCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC LEKVFDAVKNVISSENVASLQLTAVKIECIASEGSLGLAAIVISPTKDLLNFQSKLIDAL HHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHH NPYIEKNGTSTAYYVAPEEDPNINEATLEYVENYIPDHSGKNFVPHVTVGVNTIESLEKI HHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHH SNEPFTPLKSSPVGIAVYHLGNYGTARKVLKEWNLSQMNRKHG CCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCHHHHHCCCC >Mature Secondary Structure TDKPELTAIDVLLNPDEILIKKAFEVNERLRYEFSKGFKLDESHVPHITILQRYVRTTD CCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC LEKVFDAVKNVISSENVASLQLTAVKIECIASEGSLGLAAIVISPTKDLLNFQSKLIDAL HHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHH NPYIEKNGTSTAYYVAPEEDPNINEATLEYVENYIPDHSGKNFVPHVTVGVNTIESLEKI HHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHH SNEPFTPLKSSPVGIAVYHLGNYGTARKVLKEWNLSQMNRKHG CCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA