Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

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The map label for this gene is 21227892

Identifier: 21227892

GI number: 21227892

Start: 2138403

End: 2139245

Strand: Direct

Name: 21227892

Synonym: MM_1790

Alternate gene names: NA

Gene position: 2138403-2139245 (Clockwise)

Preceding gene: 21227890

Following gene: 21227893

Centisome position: 52.2

GC content: 41.4

Gene sequence:

>843_bases
ATGAAGTTACAGCTTGTAAATCTTCTTTTATTTTCTGAGAAAAGAAAAAATTTATTGTTATTGCTGGCAGAAGAGCCCAG
GAATATTGATGAAATTCCGGATCTGCTTCAGATTTCCAGAATTTCTCTTCTTCCCCATATCAAAAAATTAAAGGAAAAGG
GTTTAATTCTCCAGAACGGAGACGTATATTCCCTTTCCACCACAGGTGAGATACTGGTCAGAAAAGCCAGGCCTTTGCTG
AATTCAGCCGGCATATTTGAAGACAATGATTCTTACTGGGGCTACAGGAAGCTTGATTCCATTCCTCCTCATCTGTTAAA
GCGCATAGGGGACCTTAAAGGAAGCCAGCTACTCGAACCAGGGCTAACTCACGGCTTTGACCTTTTTCCTGAGCTGATAG
ACAATTTTACCGATTCTTCAAAGGTTATGCTCCTTTTTTCTTTTTTTCATCCCCTGATTCCATCTTTTTCTCTGGAGCTT
GCAAAAAAGAATGTTCAGGCACAACTCATCTTTAGCAGGGACTCATTTGACAGGCTTTCAGGGGATTTTCATGATACTGG
AGAGAAGATCATGGCAAAGGGTAATGCTTCGATTTTTATTTACGAAGGAGGACCACTCGAAATACCTGCACTGATTGCGG
TTTCGGATAATGCGTTACTTCTCGGTTTATTCAATAAAAAGGGGAGATTTGAAGGGCAGTACCTTCTTAATTTTGAGCCC
CTTTCCCTTGCCTGGGGTAAAGAACTTTTTGAATATTACCGGGATCGGTCAGAGAATGTCCTTTCAATGGATTCTCCACG
CCCTTTCCCTGATGCTAACGGTGGTTTATCTAACCTGAAGTAG

Upstream 100 bases:

>100_bases
CCATATACTAATGATTATATCACTGTCATATTTATTTGAAATTTTCATACAATTGCATCTGCTTATTGTATGCTGATTTA
CGTTAGAAGGCGCAGACCAG

Downstream 100 bases:

>100_bases
AGCAAAAAGATATTACTGGTCCAGGAGCACGGGGCACCCAGCTTTAAATATCTTTTACGGCAAAAGGTCTTGCAGGTATC
CGCATGAAACGAACCTCCAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MKLQLVNLLLFSEKRKNLLLLLAEEPRNIDEIPDLLQISRISLLPHIKKLKEKGLILQNGDVYSLSTTGEILVRKARPLL
NSAGIFEDNDSYWGYRKLDSIPPHLLKRIGDLKGSQLLEPGLTHGFDLFPELIDNFTDSSKVMLLFSFFHPLIPSFSLEL
AKKNVQAQLIFSRDSFDRLSGDFHDTGEKIMAKGNASIFIYEGGPLEIPALIAVSDNALLLGLFNKKGRFEGQYLLNFEP
LSLAWGKELFEYYRDRSENVLSMDSPRPFPDANGGLSNLK

Sequences:

>Translated_280_residues
MKLQLVNLLLFSEKRKNLLLLLAEEPRNIDEIPDLLQISRISLLPHIKKLKEKGLILQNGDVYSLSTTGEILVRKARPLL
NSAGIFEDNDSYWGYRKLDSIPPHLLKRIGDLKGSQLLEPGLTHGFDLFPELIDNFTDSSKVMLLFSFFHPLIPSFSLEL
AKKNVQAQLIFSRDSFDRLSGDFHDTGEKIMAKGNASIFIYEGGPLEIPALIAVSDNALLLGLFNKKGRFEGQYLLNFEP
LSLAWGKELFEYYRDRSENVLSMDSPRPFPDANGGLSNLK
>Mature_280_residues
MKLQLVNLLLFSEKRKNLLLLLAEEPRNIDEIPDLLQISRISLLPHIKKLKEKGLILQNGDVYSLSTTGEILVRKARPLL
NSAGIFEDNDSYWGYRKLDSIPPHLLKRIGDLKGSQLLEPGLTHGFDLFPELIDNFTDSSKVMLLFSFFHPLIPSFSLEL
AKKNVQAQLIFSRDSFDRLSGDFHDTGEKIMAKGNASIFIYEGGPLEIPALIAVSDNALLLGLFNKKGRFEGQYLLNFEP
LSLAWGKELFEYYRDRSENVLSMDSPRPFPDANGGLSNLK

Specific function: Unknown

COG id: COG4742

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31636; Mature: 31636

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLQLVNLLLFSEKRKNLLLLLAEEPRNIDEIPDLLQISRISLLPHIKKLKEKGLILQNG
CCEEEEEHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC
DVYSLSTTGEILVRKARPLLNSAGIFEDNDSYWGYRKLDSIPPHLLKRIGDLKGSQLLEP
CEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCHHHHHHHHCCCCCHHCCC
GLTHGFDLFPELIDNFTDSSKVMLLFSFFHPLIPSFSLELAKKNVQAQLIFSRDSFDRLS
CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCCHHHHC
GDFHDTGEKIMAKGNASIFIYEGGPLEIPALIAVSDNALLLGLFNKKGRFEGQYLLNFEP
CCCCCCCHHHEECCCCEEEEECCCCCCCCEEEEECCCEEEEEEECCCCCCCCEEEEEECC
LSLAWGKELFEYYRDRSENVLSMDSPRPFPDANGGLSNLK
CHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKLQLVNLLLFSEKRKNLLLLLAEEPRNIDEIPDLLQISRISLLPHIKKLKEKGLILQNG
CCEEEEEHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC
DVYSLSTTGEILVRKARPLLNSAGIFEDNDSYWGYRKLDSIPPHLLKRIGDLKGSQLLEP
CEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCHHHHHHHHCCCCCHHCCC
GLTHGFDLFPELIDNFTDSSKVMLLFSFFHPLIPSFSLELAKKNVQAQLIFSRDSFDRLS
CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCCHHHHC
GDFHDTGEKIMAKGNASIFIYEGGPLEIPALIAVSDNALLLGLFNKKGRFEGQYLLNFEP
CCCCCCCHHHEECCCCEEEEECCCCCCCCEEEEECCCEEEEEEECCCCCCCCEEEEEECC
LSLAWGKELFEYYRDRSENVLSMDSPRPFPDANGGLSNLK
CHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA